Similar regions between promoters of patB
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCACTTCCCGGCAGCTGGCGATCGGCAGCGTTTGTTCAAAAGAAGTTTCAAATATTTGCT hal ....................ATCGGTAGCG...............TCTCGTACAATTGCC ste .....................TCGTAGGCGTCTTTTCCAAGG.................. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GAATGCTTTTCGCCAGCAAGTCGGGATCGTTTTCATCATAGACTGCCTGCACGACATCAA hal GAATGTTGT................................................... ste .................AAGGCGCGATCATGTT..TCATACACCGCCTGGAGCACGCTGG -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CAGCCTCCGTTTCGTAAAACTCTTCTCCATATTTAAACGGGTCCCATTTGGCAATGATCT hal ............................................................ ste CCGCCTCGACGTCGTAGGCGTCTTTTCCAAGGCCAAACGGGTCCCA....GCTATGATAT -180 -170 -160 -150 -140 -130 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TAATCATTTCCCTGACCGCATGACTTTCTTCCATATTCATCACCGCTTATAATAAAATTT hal .....................................................AAAATTT ste AACCCATT..................TCTTCCGTCTCATACACCGCCT............ -120 -110 -100 -90 -80 -70 sub GCAGTTCTATCTTATCATAGTGAAGCTTAGAAGAATAAACATACATGAGGGGGTAACAGA hal GC..TTCAATCTTA.............TTGAAAAATAAAAA................... ste ............................................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...