Similar regions between promoters of pfk
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAATCGTTAAAAACTTTACTGAAGCTGAGCGAAGAAGAATTAGTTCAGCAGCGTTATGAA hal .................................................AGCGTTACGAA ste ...TCGCTCAAACAGCTGTTGGCGCTTGACGGCGAAGAGCTCGTCCGGCAGCGCTATGAA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]] sub AAATATAAAGCAATTGGCAAAGTCTCGGTTGAAGATCAATATATCGGGGTAAACTAAATA hal AAATACAAGAAAATTGGGGAGTTTTCCCATGTAAACGATGCCATAAGCGTCAATTAAAGA ste AAATTTAAACAAATGGGCCAAGTGTCGTTTTTGCCGGAAACGATTCGGGCAAGATAAGGA -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]]]]]]]]] sub AACGTGAAGCCTTTGGCTCACGTTTATTTTTTGTGACATTCCTTAAATTTTATTTAAAAA hal CA...................................ATGCCATAAGCGTCAATTAAAGA ste AA......GCCGTTCGCTCA........................................ -180 -170 -160 -150 -140 -130 sub CAATTTATTTAATTGTATAATAGGTA--AGGTTTCATAGGGAGGATG-GAGATCCCTTTT hal CAAAGTGCTTTCTTCC-TAAGAGGAAGCACTTTTCAT..............AGCACTTTT ste ...TTTGTTCTATCGTGAAAAAAATC--CACTTTTGTAAGCCGTTTCAGCGATCGCTTCT -120 -110 -100 -90 -80 -70 sub CATTGTTTTTAGGGCAATGATCATGTTATGTTTAATCATATATGTTGCTGAGGTGAATGG hal CATTATGTCTTGTCCA..............TTTCATTATGTCTTGTCCATAGTTGTATTC ste ATATTGTGTTCCGCTGTTGTTCATGGTACATT............................ -60 -50 -40 -30 -20 -10 sub AGA hal AG. ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...