Similar regions between promoters of sodA

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGACTTAAAGTCAGCGTTTAAAATTGGCCTCGGCTCACTCATTGGTTTTTTAACAGGGG hal .................................................TTAAACAGGGT ste ACGGCTTTACGTCCGCATTACATAT................................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTATTGCAAAGGGCATCATACAGCTTTTGATGATCGGTTACTTTTTATGGACGGTCCTAT hal ATCGTATAAAAG......TAAAGCTTTTTA................ATGGAGCTTCCTCT ste ..............................TGAACGTTTCCCGTTCATTGGCGGAC.... -240 -230 -220 -210 -200 -190 >> sub AAGAAATGCTGGCGGCAGGTTTAATGGGGCAGATTATCGGTTAAAGTGAAATATGTCCGC hal TTAAGAAAATGGTTTAAGCTATGGTTAAACAGGGTATCGTATAAA............... ste ............................................................ -180 -170 -160 -150 -140 -130 sub TGAAATGAGCCAAATCGTGAGCTTTTTCATTGATTACAAAGCATTCTTTTGTTACATTGA hal ..........CAAGCCATGAGCGTTTTCGTTGA....AATTCATTCTTT........... ste .........................TTCATCATGGCCACACCTTTCTTTTTCTCCATT.. -120 -110 -100 -90 -80 -70 sub ATGAAGAAAGGCTCGCTGTGAAGCGTCATTTCAGTACATATATACTAAGGAGGAATTATC hal ............................TATTATTTCACGTTTATCAAGGAGGA...... ste ....................AAGCGTCA...CATTACATATA.................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...