Similar regions between promoters of spoIIIAA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTTTTATCCTCTATGATTGAGCTGACGGCAGCAATTGTCATGCTTGTGACCAACGATGTC hal ....TATCAGGTCTCATTGAATTAACGGCAGCGGGGTTAATGTTAAAGCTTAACAGTGTA ste ....TGTCCGCGTTCATGGAACTGAGCGCGGCGCTGTTGATGCTTGTGTTCAATGACGTG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGAAGGCGGTTGTGGTTAACAGCATTCTCGCTATTGTCGGTCCGTTGATTTTTATCATT hal GAAAAAGCGGTTGCTATTAACGCCATGCTTGCCATTGTTGGGCCGGTCATTTTTCTTTCT ste AAAAAAGCGCTTGCCGTTAATGCTGCGCTTGCTGTCGTCGGTCCAACCGTCATGATGGTG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACAATGACTGTCGGAATCTACCAAATTGCCGGGCAGCTTTCGTATGCAAAGCTGATTCTG hal TCCATCACGATCGGTTT---GCTAAGTATGGCGGACCGTATGTCACCGACGCGGTTGTTG ste ACCATGGCGATTGGACTGCTTTCGCTTGCGGACGAGCTCTCGTTTTCACGGCT....... -180 -170 -160 -150 -140 -130 >>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTTT---TACGGGTGTTGTCTTGATTTTGGCGGGTGTTCATAAATAAAGAGAGGCTTGT hal TTTATCGGTACGGGCGTTTGCTTGATTTTAATCGGCATTCGAAAGTAAAGGG........ ste ..............................................AAAAAAGCGCTTGC -120 -110 -100 -90 -80 -70 sub CATAAAGTCTGCCTCACA-TCATACATTTTAAAGAAGCCAATCGGTAGAAAGGAGGAGGC hal ......GTCGGCCTCAGAATCATA.ATTTTAATC--GGCATTCGAAAGTAAAGGGGCGAA ste CGTTAATGCTGC........CATACATATGAACTAGTCCACAAGA---AAAGGGGGAGG. -60 -50 -40 -30 -20 -10 sub TCTG hal TC.. ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...