Similar regions between promoters of spoIVA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACTGAAATCCAGGATATGATTTGGCATGAAACCCCCTTTGTCCCCGCGTTTTCTGTAAAA hal ............................................................ ste ........................................................AAAA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATACGGTAAATGACAAACAGGAACCTGTTTTTTTAGAAAATGATATGAAAAAGGAATGA hal .................................................AAAAGGAACAA ste TATCCGCACCACTACAAGCCGG...........................AAGACGAATGA -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub ACCTTTCTCCCTTGCATACAAATAGGGAGAAAGGTTTTTTTATATTAATAGATTG-AG-G hal CCCCTTCTCGGTGGC.....................TTTTTCTAATCATAAAGTG..... ste ACCGATTTT--TTTCACAAAATGAGTCATCTTCCCTTCTCTAGGAAAATACATTCTAGAG -180 -170 -160 -150 -140 -130 sub ATGAGAAATTTTCTAAAGATGTCATATTCAAATAGGACAACGTCATACACAT-ATAGTGT hal ........TTTTCTAATCATAAAGTGTTCA....GGACAACATCATACATATGATAGTGT ste AAGGGATTTTTTCTATTTTAGTCATAACCGAATCGGACAACATCATATGCAT-ATAGTGT -120 -110 -100 -90 -80 -70 sub CCTGTGTTTGATTGAAAGAGCTTAATAAAATTGAAAAGGATAGGAAGTCCGGGAGGGGAT hal CCT...................TCATATAGTTGACAAG---AGGAAG..CGGGAGGGGAT ste CC.........................................GAAGGACTGGAGGGGA. -60 -50 -40 -30 -20 -10 sub CAC hal CTC ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...