Similar regions between promoters of spoVB

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<< sub AAAATATCACTCGCCAGTTCATAAATGCTCAGTTCCGTTTTC---TTTTTCCACTTCTTA hal ..................TAATAAATGTTCA........TGC---TTGACCCACTACTAA ste ..AATGTCGCTGACCAACTCATGCAGTTTTTTTTCCGCCGGCCGATGCTTCCACTTGCGG -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCTGTTAAGTATGACCACAAACTTTCGAGTTCAACATCATCATACCCGAGAATCTTAAAC hal GCATATAAGTAATAACGGAAAATATCCA...........................TGAAC ste GAACATAAACATTCCCACAGCCCGTCCATCGTCACTTGCGTATAGCCGAGAAGACGAAAC -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCTTCCAGTTTGCTGTAAAGAAACGGCCTGACGTGGTCTTTATATAGATCGGCTGGATGC hal TCCTTCACGTTGCT.............................................. ste TCATCGCACTTCGACTCGAGCGCCGGCATGAGCTGTTC...................... -180 -170 -160 -150 -140 -130 <<<<<<<< sub TTCTCCACGAATTCCACGCTCCTTTTTTATTGTTTTTCAAGAAGACTTGTCATGCTTGGA hal ...................TCCTTTTTTGT........AAAACAACTTGTCATGCTTGAC ste .............................................CTTGTCATGCTTGGC -120 -110 -100 -90 -80 -70 sub CGACATATACGCATATCTTTATTGTATATGATTCCAGGTAGTTTGAGAAGGCAGGGGGTA hal CCACTACTAAGCATAT.............................AGAAAGTAGGGGGGC ste CATGGGCCTTGCATAT----ATTGTATAAAAGATGGAGGCATTTGAGAAGGCAGGGGG.. -60 -50 -40 -30 -20 -10 sub AAA hal AAA ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...