Similar regions between promoters of spoVS
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAACGCTCAGCGGAGTTGTCATTGACATTGACGATCAAACGAAAAAAGCCGTGAAAATTG hal ......TAAGTGGAGTAGTAATTGAACTGGACCCAAAAACAGGTTTAGCTAAATCGATTG ste .....................TTGATGTAGACGAAAAAAGCGGACGGGCGTTTCGCATTG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCGTATTTTAATCAACGATGATCACATGTTCTTTGAATAGTTGAACATATGGTTATTTT hal AGCGGATTCTCATTAACGAGGATCATCCATTCTATTTCTAGT................TT ste AACGGTTGATCATTAACGATGACCACCCTTATTTTGAATAGTCCATCTTTTAAAAATTTT -240 -230 -220 -210 -200 -190 sub ATAAAAATATTAAAAAGAAAAGCAGGAATA----TAGCAACTCCTTAGTGAATATAGTAA hal GTAAAAAAATTTTTAACAAA............................TCAATCTCGAAA ste TTAAAA-TGTCCTCCTCCCATGCAGGAATAGTTGTCGAAAC-----AGTGAATATAGTTA -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub AAATGGAAGGTAGCCCGCTATTTTTGAAAAGCATTGTGGGGATGGCTTTTTGGATAGCAA hal TACTAGTAAGTAGAGTGGTAT.................................TAGCTA ste CAATGAA........................................TTTTGAATAGTC- -120 -110 -100 -90 -80 -70 sub CATCTAATAATGATTGTTCTAATGAACACTCACTTATCCATTGTAAAACTAAGGGGGAGC hal AATCGATTGA-GCGGATTCTCATTAACGAGGA-TCATCCATTCTATTTCTA......... ste CATCTTTTAAAAATTTTTTAAA...................................... -60 -50 -40 -30 -20 -10 sub AGAA hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...