Similar regions between promoters of sspF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACGTACCCTTCTGTTTTTGTGATACAACTAGATCAAGACGAGAACTCGTTTGAAAGAGTT hal ACATACCCTTCTGTGTTTATTATTAAGTTGGATGAAGATCAACATGCGTTTGAGCGTGTA ste .........TTTTTTGTTTTGTCATAAATAGGT---GACGTGAACT.............. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> >>>>>>>>> sub TCATACAGTTATGCTGATATTTTGACTGA-GACTGTTGAGCTGACATT---TAATGATGA hal TCTTACAGTTATGCGGATATCTTGACAGA-GACAGTTGAACTGACGGTCTGTGAGGATGA ste .........TTTGCTGCTTTTTTGCTTTTTGTTTTTTGTTTTGTCATA---AATAGGTGA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]] ]]]]]]]]]]]] sub CGCCGCAAGCTCAGTGGCATTTTAACGGGCAGTGAACCT-TTTGTTTACTGCTTTTTGTT hal CGGTGCAA.....................CATTGGCCCT-TTGGATT............. ste CG........................GGGCAGTAGACAGATTTGTTTGCTGCTTTTTTGC -180 -170 -160 -150 -140 -130 sub TTGCCCTTTTTTGGTTTCCAATAATTTTAACGAAAGTTCCATCTGATTTAACAAAAGATA hal .TACCCTTCTGTGTTTATTATTAAGTTGGATGAA.......................... ste TTTTTGTTTTTTGTTTTGTCATAAAT.................................. -120 -110 -100 -90 -80 -70 sub AAACAGTCACATATTATCGTGACGTGCACGAATGGCTATCACTTCTAAAAAAGGAGTTGT hal ...................................................AGGAGCTGT ste ..................GTGACGTGAACTACT........................... -60 -50 -40 -30 -20 -10 sub TTCGT hal TGCGT ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...