Similar regions between promoters of sucC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GGACCCTTGTCGAATTAATGCGCCATTTGACGGTAGATGATCAAATTCCTGAAGCTCTTT hal ............................................................ ste .GACGCTTGTTGAGCTGCTGGGGAAAGTGGAGATCAACGAAACGATCCCGGAGGAGCTGT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>> >>>>>>>>>>>>>> sub ATGAAACGGTAGCCGAGATTTTTTCATTCATTTA-CAAATTGGAC-GAAAGCGTAAAAAA hal ..........................................GAA-AAAAGGTAAAAAGG ste ACGCCTTAGTGGCTGAATTGTTCGCGTTTTTGTATCAGCTTGATCAGGAAGCGAAA.... -240 -230 -220 -210 -200 -190 >>>>>>>>>> sub CAAAAAATAGCTAAAATATTCCCCATCCTTCTTTGAAATTTATGTTTTTAATAAAGTAAA hal CGAAAGATAGATGAAAAA..............................TAAAAAGGCGAA ste .........................................ATGTTAGGTATAAAATGAA -180 -170 -160 -150 -140 -130 sub AGTTTGAATGTTTAGAAGGATTAAAAGATTTTGCATCGAA-CTGTAGACAATTCTTCCAG hal AGATAGA-TGAAAAAAAGGAT-AATTGATTTGCCCACCTA-CTGTCG............. ste AG.........................ATTTTGCGGCGAAACGGTGGACAAG-CGCGAAA -120 -110 -100 -90 -80 -70 sub TATTAT-TATAGAATGAAAGCGC--AGTCTATTTTAGTTTTGTTACATAAGTTAGGAGGA hal ........................................TCTTGCATTTGACAGGAGGA ste TGTTAGGTATAAAATGAAAGCGCTAAGACT-TTTTTGATTTTATACATAGG......... -60 -50 -40 -30 -20 -10 sub TGGGAA hal TGG... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...