Similar regions between promoters of ybbK

{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{ {{{{ sub CCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATCCTCCAAATGGTGAC hal ...............................................TCACAATGGTGAG ste .......................................GCTAA-CCGCCACATG..... -300 -290 -280 -270 -260 -250 {{{{ {{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{{ sub CCGT---ACGGGATTCGAACCCGTGTTACCGCGTGAAAGGGCGGTGCTTAACCGTTTACC hal AAGGCAGAGGGGAGATGAAGGGATCTTACTGCCTTGCAGGCCGCT............... ste .......................................GGCGGTGC.......TTTGCC -240 -230 -220 -210 -200 -190 {{{{{{{{ sub AACGGGCCGTTGTGTTCTCGTCGAGCTGACAAAAGTTATTATATACAGGTCACCCCCTGT hal ..........................TGACAAATGTTA...................... ste AAGCGGC.........................................GTCGCCCCCT.. -180 -170 -160 -150 -140 -130 sub TTGTAAAGAGGAAAATTAAATTTTTTATTTTCAAACTTTTTAACTCTTTTTTAACTGAAA hal ...TAATGAG-AAAGTTTGATTCATACTATGACAAATGTTACACGAATATTT--CAGAAA ste ....AAAGGGGAATAG-AGATGTATTAT........TTTTGTGCTCTTTTTT........ -120 -110 -100 -90 -80 -70 sub AGCTCCAACTA-AAGCCATTTATTTTATGATAGAGACAAGCAAAGCAAGAGAGGAGAAAC hal --CACCTTCTGTAAGGGATTCATGTTATACTTATTACAAACAAAGGCAGAGGGGAGA... ste ..CTCCTAC-A-CAGCTTTTCGTTTTTTG......................AGGAGAAA. -60 -50 -40 -30 -20 -10 sub CAAT hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...