Similar regions between promoters of ydbM
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTTTATCATCTATCTGTATGCCAGCTGGATTGTGTTGGCCGCAGTGACCGCTTTTGAAG hal ATTTCATCATACAT.............................................. ste ...................................TCGCCCGCTATGGCCGC........ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGCCGATTTTCTCAAGC-TTTTTCTTTGGCGGCCTGGTGATGACGATGGGTTACCTGACA hal ........TTGTCAAGG-ATTTT..................................ACA ste .....ATTTTCCCGTGCGTTTTTGTTTTCAGTCCTAG...TGACGATG............ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]] sub TATATGCTGATTTATCTCGGCATGAAACAAGACCGGGATGCAAATCCTGTGTAATCGCGC hal TACCTCCTCATTTATTT........................................... ste ............................................................ -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]]]] sub TGTTCCCTTGGGGAACGGCGTGTTTTTCTATACTGGGCAAAAGGTTAACAGTTGCGGAAA hal ............................................................ ste .........................TACGATGCTGGGAAAAATG...........GGAAA -120 -110 -100 -90 -80 -70 sub AATGGCAGGAAATCTATAATACATATTAAATTTATCG---GAATTAAAACTGGGGGGCTG hal .............CTATCTTTGACTATTAATTTAACGAAGGAATTCAAAGTTG....... ste AATG........................................................ -60 -50 -40 -30 -20 -10 sub CCGG hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...