Similar regions between promoters of ydeT

sub CTAAAGAGACCTGTTTTTTAATATCCAGATGATTGTCTAGTTTCAGCTTGGGCTCTATGA hal ...........TATATGTTTATATACTGATGATGG......................... ste ............GTTTTTATATAAGCAAATCAT........................... -300 -290 -280 -270 -260 -250 sub CCACTCCCATAACTGAAATAGTCTAATATTTATACCAGAAGGGATTGTTTATATAAATAA hal ........................AATATATGTACTAATAG---TTGCGTATATAAGTAT ste .............................................TTTTTATATAAGCAA -240 -230 -220 -210 -200 -190 sub AAGTTTATATAATGACGGGGGCGCTAAGGAAACGCGGGGAGCGACTCAGGTTTTCGTTTC hal ATGTTTATATACTGATGATGG--ATAGGGAAA............................ ste ATCATGATATGATGATG........................................... -180 -170 -160 -150 -140 -130 sub AAAGTTTTGATCCTTAAGATATACGGAGCGCTACATATGGAAACGTAAAGGGGAATGTAT hal ....................................ATGGATAGGGAAAGTGAGGTGTA. ste .....TGTGTTCGTTTTTATATAAGCAAATCATGATATGATGATGAATGGAGGAGGTTAT -120 -110 -100 -90 -80 -70 sub AATCATTTGGCGTGTATATAACGATTTGCTTATATATTGATTTGGGAAGGAGGAGCTCAT hal ...........GCGTATATAAGTATATGTTTATATACTGATGATGGA............. ste A.............TATATAAGTACTTAATTATATACTGATT.................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...