Similar regions between promoters of yerQ

]]]]]]] sub CTGAGGCTTTCAGCTTGTTGAAAAACCCTCGCATTCGTTGTCAGGTCTGCGCGTCGGTGC hal .....................AATTCCCTAGCAT.......................... ste ..........CAGTTGCTTGAGAATCTCACG............................. -300 -290 -280 -270 -260 -250 sub TCACGAATTCTACATTCGCTCCGCTCCAATGCTCCCCCTTCCTAGACTACAAGGGTTTTC hal ............................................................ ste .......TTCTGCGTTTGTTCC...................................... -240 -230 -220 -210 -200 -190 sub AATCAAGCTGAAAGAATGTTAAGGATGACAAAAGCTCAAAACAAGAATCAGTTTTGAGCT hal ...............AAGGTAAGTACGATAAAA..........AGAATCAG......... ste .........GAACGAGTGGAATGGAAAAAAGAAG.........................T -180 -170 -160 -150 -140 -130 sub TTTGTGCGTTTTCACCTGTAAGATTAT--GTACATTTTGTTGCGATTTTTTTAACTCATA hal .................GGAAGATTGTAAGTACAGCTTTAGCCGATT............. ste TTTCTGCGTTTGTTCCTACGACATT................................... -120 -110 -100 -90 -80 -70 sub GTATAATTAAAGGTTGTTAGTGTAAAAATGGATCGGATACTCTTAAGTAGGATGATGAGA hal .......TGAAGGTAAGTACGATAAAATGAAATCGTATATTTTCCAG............. ste .....ATCAAGCGTTGTTTCGCTATGATGGGAACG.........AAGTAGGTTGAAGA.. -60 -50 -40 -30 -20 -10 sub TA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...