Similar regions between promoters of yfhB

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTGTCGGCTCATCTTATGGCGCGCTGCTCCCAGCGTCGGCACTTATTGGAGCTCTGCTC hal ............................................................ ste ...GTTGGCTCAGCTATTGGCG...................................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTTTTAACAGCTGATATCGTCGGCAGAACCTTATTTGCTCCGGTGGAAGTGCCGGCCGGC hal .......................CGGTATCTTATTCAATCCGTTGGAAGTGATGGTCGTT ste ..........................................................GA -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTCTTTACAGCGGCTATCGGCGCACCTTATTTTATTTATTTGCTCTATAAAACAAGAAAT hal TTCTTTTC............................TTTATGAACTATTTAATAAAAAAC ste GTTTTTGCAGCGGGCC-CGCGGCATCGTATT............................. -180 -170 -160 -150 -140 -130 >>>>>> ]]]]]]]]]]]]]]]]]]]]]]]]]] sub TCTTAATCGTTACACCCATTTTCTTAAAAAAGAAAATGGGTTTTTTTGATAATGACTGAA hal AAGCAAGCAG-ACACTCTTGATTTTAAAAAA............................. ste ......................................................AATGAA -120 -110 -100 -90 -80 -70 sub GATTCGTAATTATTTTTGCTATACTGACAGAGACATTGATAAAGAAAGGGCGGCAGATGA hal ............................................................ ste CATTCCGATGTATATT..............................AGCGCGGCCGATG. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...