Similar regions between promoters of ygaF

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCACATCCCAAAAATAAGCGCCGCTTGCTTTCTCCATTGCAACAGGAGAACCGCCGC-CG hal ............................................................ ste CCCCATCCCCAAA..AAGCGCTGCTCG........ATCGCCATTGCCGAAGCGCTGCTCG -300 -290 -280 -270 -260 -250 sub ACTGCTTTATATGATCTAGACG--GGCTGTTTACACCGCCGACAATGTGCTGTAATGCCT hal ........ACATTATCGAGACAACGGTTTATTTTAGCGGAGTCACTTTGCT......... ste GCTACATTAT.................TGTTTACCCCATCCCCAA............... -240 -230 -220 -210 -200 -190 sub CATTGTGAAGTTCAATTGATTTTGTATGCAAGAATAAAAACCTCCTATATCTCCATGCGT hal .........GTTCAATGGCATCGGTTTGGGACATTA..............CTCCCAGCTG ste ................................................ATTTCCCTTCGT -180 -170 -160 -150 -140 -130 sub CCTTTCTATTGTAGCATGCTTCCGAACAAGAACAATGGCTTCGGGCTTCAGATTCAGCTG hal CTTTTGTTGTGTCG..................CAATGGCATCGG................ ste CTTCGCTA............................GGCGTCGGGC..........GCTG -120 -110 -100 -90 -80 -70 sub AGATG-GTTGTAATCTGGACAAGAATTGGATACGCTTAATAAAAA---AACATCCGGAGG hal ..ATA-GTTGTCAGAAGGAGCAAGTTTCGTTACGCTTAA..................... ste ATATGAGTTGCAATTTCCCTTCGTCTTCGCTACGCTAAAAGAAAATGAAGAAGACGGGGG -60 -50 -40 -30 -20 -10 sub TAACGTA hal ....... ste GAACG.. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...