Similar regions between promoters of yheM

<<<<<<<<<<<<<<<< sub CTCTCGTTTGTCGCATAACAATCTCTCCATTGGCATAAAATCTCTACATAATGCTGTACA hal ....CTTTTTTTATTTGACAATTTCCCGATT............................. ste ....................ATCCCCCCATTTGACTAGATTGATAACTTTATTGTCTAAA -300 -290 -280 -270 -260 -250 sub GCAGGCAGCTTATGAAGATGCCTTATGTTTACAACCTATG-TATTACCAGTCAAGTATAC hal .............................TACTATATATT-GATTATTGGTCAAAT.... ste GCCGGCTGCCCATGTCGTTTCCAT.......CAATCTATGATATAATCA.........AC -240 -230 -220 -210 -200 -190 sub AGGAATAAAACTGGAAAGCACATAGAAAATTTGTCGAAATGTCAGATTTTAAGG---AAA hal ...................ATATTGATTATTGGTC-AAATGACAATGATTTTGT---CAA ste GGCAACAGAAAGGGAGTGCACGT.....ATTTGACTAGATTGATAACTTTATTGTCTAAA -180 -170 -160 -150 -140 -130 sub AAATAAACTCCTTTCCGCTATAGATCTCTTGATCTTTCTGTTTTTCAGCTTGTCCAAT-- hal ATATAAAAT..............ATTTTTTGCTTTTTTTATTTGACAATTTCCCGATTCA ste AATTCGTCTCATTTC............................................. -120 -110 -100 -90 -80 -70 sub ATGGTAGAATTAG-TGATAATGACAGCTTGAATGACATCAGGGACATCTCGAAAAGGGAG hal ATGTTGCAATCAAATGGAAATGA..................................... ste ....................................................AAAGGGAG -60 -50 -40 -30 -20 -10 sub GGCTTTT hal ....... ste TGC.... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...