Similar regions between promoters of yhfR

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGCCGTCAAAATTTGTGTCTGCTCGCAAGAACTCGGCATTCCCTTTTCAAAAATCAATG hal ............................................TTCTCCTAAATCATTG ste ...................................GCCATTCGCTTTTACGAACGCCATG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGCGCGGCGGCGCCTTAGCTCTTGGCCATCCGTACGGTGCATCAGGTGCAGCTCTGGTAA hal AGC..........CTTACTTCTAGGC.................................. ste GGCGCGCCGGC-CATTCGCTTTT..................................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>> sub CCAGATTGTTTTATGAAGCGAAAAGACGGCCAGACTGTCAAT----ATGCTGTTGCAGCC hal .....................AAAGATGGCCGCACGATTTATGTAAATCCTCTACCAGTC ste ..............GCATCGAAACGCCGGAAAGAAT........................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCGGAAGCGGCGGCGGAATCGGACTGGCTTTATTATTTGAAGTTCTTGCATAGGCTTTT hal ATCG.....................TTGATTTCTTACTTCTAGGCTTAGAAAGCAAATTT ste .....AAGCAGAGATGAAAACGGAC................................... -120 -110 -100 -90 -80 -70 sub TCATAGGACACACGCTTTCGATTTAGTATAATAGCGATATGAATAAAGTCAGGAAGGGGA hal TCATAGGA.................................................... ste .....GGGTACGAGTTTCCGGTTGTGTATGATGCCGATTT.................... -60 -50 -40 -30 -20 -10 sub TTTT hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...