Similar regions between promoters of yjcH

sub GTTTAACGCTTCTTCTTATCTTCCAAGCATAAAAAACGCTT-GCTGGATTTAGCACCTTG hal ..............................AATAAACGATT-TCTGCAAT.......TTG ste ..........TCTTCTTATCTGCCGAATTGAATGCTCAATTCGCTGGATTTAGCACCTGG -300 -290 -280 -270 -260 -250 sub GCGCTTTGCAAATGCAAA-ACAAGCCG-GTTGCTGAGGTTTCTAAGGGCCAGT-CCCTCC hal ACGCGCTGCTTGTTCAACTACATGGCTCGGTACTGGCTTTTTCAACTGCTAGG-CCC--- ste CCGCCGGGCG-------------GCTG-GTTGCTGAAGCTTCATTGGGCCAGTTCCCTCC -240 -230 -220 -210 -200 -190 sub ACCTCTCACGATAAGAAATAT---CGATTTCAATTTT-CTGATTGTTTTATAT----TAG hal -CCTCTGACG..ACGAATAAA---CGATTTC............................. ste GCTTCTCTTGATAAGAATGAGACGCGTATTCAATTTTTCTAATTTTAATAAAAAATGTAG -180 -170 -160 -150 -140 sub CGCAATTCACAGTTTATTTCAACACTTTTTTCTTCGTGTGCCGAACCGTTTAAAGAGAGA hal ....AATCCTACTTTATTCTATCATACTTTTTATAGTG...................... ste CGCATTCCCCCCGTTTTTGCAAGCCATTTTTTT........................... -130 -120 -110 -100 -90 -80 sub AATTTCTAATAATTCATGGTACAATAATTGAAAATGCAAGAAAGTATAGTGATGTCCTGG hal ..TTTATAGTGATT-ATGGTAAAATAAAAGCAA-TCCAATGACGTATTGTG......... ste ...............ATGTTACAATAACAGA............................. -70 -60 -50 -40 -30 -20 sub AGGAATGTTTTT hal ............ ste ............ -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...