Similar regions between promoters of yjjA
sub AGCTTTTGAACAGTGTGTAATCACAGTTGTCGCAGCGCCCGCTGCGGGCATCCGGATATT hal ATCGTTTAAACTGTTAGTAACCA..................................... ste ..CTTTGGGCGCGTGTTTTTTGATGGTGGTCG.......................ATACT -300 -290 -280 -270 -260 -250 sub CATTGAATTCGTAAACAATCGATGTATCGTAGCCTTTTGTTTCATATTCTTCTTTTTTGG hal ...........................................ATACTGCTTCTTTTTGT ste CGTTGAA...........................TTTTGTTGCATA.............. -240 -230 -220 -210 -200 -190 sub TTTCCATGTCGATCCTCCGTTACAAGACGTGTCTGCTGTTTATCTTACAGCAAGCTTCCG hal TTTCCCT.....TTCTACGTGAGAAGCAGACTATACTGCTTCTTTT.............. ste ..............................GTCGGCTGTTTCT................. -180 -170 -160 -150 -140 -130 sub GCGTATTCAATGGATTTTAGGAGGTTGGGTTTATCTTGATTTCTCCCTTGGTTTGCGCCA hal ...........................................TCTTTTTGTTTTCCCTT ste ........AATGGTTTTT.GGTGGTCGGCTGTTTCT...TTTCTGCCTTAGGT....... -120 -110 -100 -90 -80 -70 sub AAATAGCTTTATTAAGCTTATATACATAAAAAGCCTATGCAAAGAGGAGAGGAAACGGGT hal ATAGCGGCAAGGTGAGCTTATAAGCA..............AAAGAGGAAAGGGAATTGG. ste ................................GCATAGGCAAAGA............... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...