Similar regions between promoters of ykuI
>>>>>>>>>>>>>>>>>>>>>>>>> >>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACTTTCTATAATATGAAACATGAT-GAT-GATTGGATGTATAAAGGCACTGACTGGAAT hal .............ATGGAATATGAGCGCT-GATTG......................... ste ....TGCTATAATAAAGGCAAAGAT-GGTCGATGGGAATGAGGTGGGCAC.......... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTTACTTTTGGACAGCTGCTAGTTATAATGCTGTTATTTTTGTATTTGTTTTGGTTATT hal .TTTTCTTACGGAGAGC..........................TGTTTCGTTTTCTTACG ste .TTTGCTTTCGGA....................GGTATTTCTTCATTTAT.......... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGAAACAAATGAATAAAATTCTTAATTAACCAGTATGTAGATTGATAATCTCAAAAAAA hal GAGAG-CAAAAGAACGGTGTTCTTAA.................................. ste ..........TTAATCAAATTTGCCGTAAAGCAAGATG...................... -180 -170 -160 -150 -140 -130 sub TTTTCCTCTTCTTTTAACATACTCCATACGACCTACTTTTCCATACTATGATTTTTTTGA hal ...................TAGTAGAAACAACTGTGTTTCCTAGCGTTTGATTTTTGTTT ste ....CCGCTTTTTTTTACGT...............................TTTTAATCA -120 -110 -100 -90 -80 -70 sub AATTTGTGGTGTAGTTATAATTGTGCGTATAATCA-GACAAAGATAGAGAAGCAGGTGAT hal CGTTTGCGCAGGAGGTGTA.......................GATACAGAAGC....... ste AATTTGCCGTAAAG....AATTATGC-TATAATAAAGGCAAAGATGG............. -60 -50 -40 -30 -20 -10 sub AAC hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...