Similar regions between promoters of yloC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAACTTCTGTTTTCTCTAGAAATCCGTTTCAAAACCTGTATTTAATCGGCGCGGTATTGT hal .........TTTTCTCAAGCAAGC.................................... ste .............................CAACGCCCGTAGTGAACCG............ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATCCATTTTGCTGATGCTTGTAGTAATCTACTATCCGCCGCTTCAGCCGATTTTCCATA hal ..TCGATTTTTCTCAAGC.....GTTTTCTACTATC.............GATTTCGCTTA ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGTAGCCATCACGCCGGGGGACTGGATGCTCGTCATCGGTATGTCCGCCATCCCTACTT hal CTAAAGGCA.....................................CGTTATCTTTACTT ste .........................................ATGTTCTCCACAAAGTCTT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTGCTGGCGGGGTCACTTTTAACAAGAAAAAAATAA-ATTCATATGATATAATCTTAG hal GTTTG.................AACGAAAAAAGAATA....................... ste GACTGACTCCTGGCTCGCTTTTTACGAGAAAATAAAAGGATGGATATGTTATAATAAAAA -120 -110 -100 -90 -80 -70 sub GGGTAATAGCGTGTCTAT---TGCCCTTTTATTATGAGAACAGGGAAGAATTGGGTGTTT hal .........................CTTTCCTTATGCCATCAGG................ ste AGGTGATAGAGGAACGCTCTATGACCTTTTCTTTTTCATCAAGGCAACAATTGGGTGTAA -60 -50 -40 -30 -20 -10 sub TAAA hal .... ste AAAA -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...