Similar regions between promoters of ymfC

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGTTTCAATGCTGCAAAGAAGATTCAGAATTGGCTATACGAGAGCGGCGCGCCTGATTG hal CGGTTTCCATGTTACAACGAAGGTTCCGTATCGGTTATACACGTGCGGCGAGGCTCATTG ste ....TTCTTTGGTCGAAGGAAGATTTAAAA.............................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACGCAATGGAGGAACGCGGTGTTGTCGGACCGTATGAAGGCAGCAAACCTAGGGAAGTAT hal ATGAGATGGAAGCGAGAGGCATTGTCGGCCCGTACGAAGGCAGTAAGCCGAGAGAGGT.. ste .....ATGGAGGAGCGCGGCGTCGTCGGCCCGTATGAAGGAAGCAAGCCGCGCGCCGTTC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATTATCAAAAGAGAAATATGATGAGCTCTCTTCTTAATGAAGGGAGTTCCGCTTTCTAT hal .........ATGAGCTCTATGATGA...........AATGAACTCAGCATCGGTTTCCAT ste TTTGGTCGAAGGAAGATTTAAAAAAGACATCATAAATGGGAAAAAGGGCGGGCGAAAAAA -180 -170 -160 -150 -140 -130 sub AGTTG-----TCAATAATG-ATATTATGTAAACTGATCACCTTTCTATTTATTTTT--TC hal ............................................................ ste GCTTGCCCGCTCAATCATACATCTTATTGGAAGCGTTGCCAATCCTATTTCTTTTTCTTC -120 -110 -100 -90 -80 -70 sub GACAAAACATGATAT-AGTTGTCCAATTGTTCAATAATTTTTATCGAAAGTGGTTTACAT hal .............................................GAAAGTGGATGA... ste GACAAAATTTGATATCACCTATTTATTTGCCCAGTAA....................... -60 -50 -40 -30 -20 -10 sub AGGGGAAAC hal ......... ste ......... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...