Similar regions between promoters of ypuL

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGCAGTATACGGGCCCGATTCCTTTATCGGCAGGCTGGCTTCCGTCATGCAGGGATCTA hal ......................................................GATCAG ste ......................................GCTTCTACGATCCAAGGCAGTA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAGATACAACGCTTTACGTACTGACTGTGTATTTCGGAGCAGTCGGCATTAAAAAAATGG hal CAGATGGAATG.................................GGGATAAAAAAAATGG ste CGGAGACGACGCTTTACGTGCTCACCGTCTATTTTGGCGCCGTCGGCGTCAAAAAAATGG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGATGCATTAAAGGTGGGACTTCTTGCAGATTTAATCGGCGTAGTTGCATCTATCATCA hal GTGACGCGTTAAAGGTAGGGTTATTAGCTGATGTGGTAGGGATTATTGCAGCCATTGTCG ste GCGATGCGTTAAAAGTCGGCATTTTGGCCGACATTCTCAGCTTTATTGTTTCTGTTTTCA -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>]]]]]]]] sub TCGTTACGTTATTATTTGGGAGCGCCTGAAAACGGCGTTTTTTTTAGATTTG-GCATAGG hal TCGTCACGATTGTTTTTGG.........................TAGACTTGAGGACAAG ste TCGTTTTGTTTGTATTCGGGCGCT------AGCGGCGCCTTTTTTCGTT........... -120 -110 -100 -90 -80 -70 sub AATTTGAAAAAGCTTGTTTGTTAAGGTTGAAAAAAGTAAGATAATACTTGAGGTGAAAGA hal AACG-GAAGAAGCTATGATGATAA....GAAGAAGCTATGATGATAAATGAGGTG..... ste ............CTTGTATCTGTTAGACGGAAAGGGTAAGATGATGAAAGAGGTGAAAGA -60 -50 -40 -30 -20 -10 sub C hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...