Similar regions between promoters of yqeN
sub ACAACAAAACCAACAGCTGAATCTACAGCATCAT--TTCGTTTGCTTTGAACGTTTTTTT hal ........................ACAGCTTATG--TTCGTTT................. ste ...................AATCTACCGCCGCTTGCTTCTTTTCCTT..........TTT -300 -290 -280 -270 -260 -250 sub CAAAATCATTCAACTTTATCCC--TCCTGACTGACTTA-----AGTATAATGGAATTGTT hal .......................................................TTGTT ste CAAATACGTTCATCGTTTTCCCCCTCCTCGTTCAATCATTTTTAGTATAGACGAAAACGC -240 -230 -220 -210 -200 -190 sub TTGAAAAATCT-AGAAGCTAAGGTAACGTTTTCTGTTCTGGTGATTATCGCCTTTTTACA hal CATAAAATTCTCATAAACCTAGGTCACTT............TGATTATCGTCATAA-AGA ste GTGAAAAATCT-A............................................... -180 -170 -160 -150 -140 sub AGCTGTCCCGGGGGCTTGCGAACAGGCGTTTAATATAAATGGGGAAGCAGCAGTCAGGCT hal GGATGGCTCGGGGTCCTCCTTTATGACGTTTATCATAAATGGGGGA.............. ste .......CCTAGGACTTATAGGCTGGCGTTTA-TATAAAGGGGAA............... -130 -120 -110 -100 -90 -80 sub TCCTCTTTACTATTTTGCAAACTCAATTTAGGATAGAAGGGGATGATGAAAGAGAGGAAG hal ..........................TTTATCATAAATGGGG.................. ste ..........................TTTAGTATAGACG..................... -70 -60 -50 -40 -30 -20 sub TCGTACAACA hal .......... ste .......... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...