Similar regions between promoters of yqfW

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATTGTCTTGGTCATTGCTGCGGTCAGCAGCACGATAAGGCTCTGCGATTTCAGCAGCTGT hal ...........................................................T ste .TCGTCCCGTTCGTCGCCGCGG.........CGAATCGGTTCAGCGACTTCCGCCGCTGT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTCCTCAAAAAAACCGTCATTGTCGCGGGTAATATTTGTCCCTTCAGATCCATGATCAAC hal TTCATCACAAGGAACGT...TGTTTCGGGGAACATTTTT..................... ste TTCTTCCATAAAATTG-CGTTCTGG---------TTCCTCTTTTCCGATCGAT--TGCAC -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATAGTAACTGTTGTTATCACGCTTTTCGTAATCGTTTGCCACCTTCAATTCCCCCTTCTG hal ..................................TTTCGCTCATTTGACTCCCTCT-CTT ste ---GTAACTTCCGTTATACGTGCGCTCGCGGTCGTCTGCCATATGC--TTCCCTCGCTTT -180 -170 -160 -150 -140 -130 sub TTTTATTAAAGGAGCTTTTATAGTTTGATCCATTTTGCCTGATTCATGTTTGCTAAACTT hal TCTGTTTCGGGGAACATTTTTAGTATGATCGATTTTCGCTCATT................ ste CCTAAAGTAAGAAGCATTATTAGTATGA..............................TA -120 -110 -100 -90 -80 -70 sub TTCTGTTAATGTCAATTGTTTATGTTACACTTGAAGGGATGAAACTGAAGGAGTGTGGGC hal ................................GATGGAAAGTACATAAAGGAGTG..... ste TTTTATCAGTGTGAATATTTTCT........TGAAGCGGTGAAA................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...