Similar regions between promoters of yqjH

sub TTACGTATCCAAGTTGTAATGCGATGATATATAATAATAAGAAAGTCTGTTCGGTTAATG hal ............GTTTTCTTGTCGAGTTATTTTTCAAGGGGAACGTTTTTTCGTATAATA ste ........CCGCGTCGTTGTGCGAT................................... -300 -290 -280 -270 -260 -250 sub TGAAAGACCGTCTGATGTTCATCTGTTCGTTTTGATTTCCATTGCTCGCCCGCACGGCAC hal AAGAAAAGCATTTTGTTTTC........................................ ste ................GCTCATCCTTGCGTTTGGACT....................... -240 -230 -220 -210 -200 -190 sub TCCCGTAAGAGGAATGCAATCCCGATTGCCGTTAGAGCAGGAAGAATAATTGTGACAAAA hal ............................................................ ste ............................................................ -180 -170 -160 -150 -140 -130 sub ATCGACTAAGAATAAAACGTCATTTATCGATTCCACAAACATTGTCATCACATCCATTCA hal ................................................CTCATCTAGTAA ste ....................CATTTATCGCT............................. -120 -110 -100 -90 -80 -70 sub ATAGCT-TCATTTTAC---TATATGTACAAGCTGTTGTC-TAATGACCGAAAAGGAGATT hal ATACCGATCCTTTCAT---TTAGTGTAACATACTTTTTC-TAA................. ste .......TCATTTTCCCGCTGGGTGTGCAAAACGTGTTCATTTTGACCCAAGGGGCGAT. -60 -50 -40 -30 -20 -10 sub TGTTT hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...