Similar regions between promoters of yrzC

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGGACCATTCTGCCAATAATTTTATCTTCAGCCACCAGATGCTGCTGGCCGATAATATCC hal ............................................................ ste .......................................TGCTGTTGGCCG......... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCTATTTTTGTCGGACGCATCCGATATGCCAATGGCTTCATCTATCATCTCTCCTTACTT hal ..TATTATTATCGGA...ATCGGATATGGTA-TCGGTTTATATATC.............. ste ..........TCGGACGCAAGGGTTAAGCC.............................. -240 -230 -220 -210 -200 -190 sub AATTACAGGGTAACGGAAAACCGTACATTAGAAAAGGGTAAAGGCCCCTTTCCTTCTGCC hal ..........................ATTAGAAAGAGGGA...............CTACC ste .....................CGTACATTCGCATCGGG.................CTGCC -180 -170 -160 -150 -140 -130 sub TCAATGAAAATTCGCTGAAGGTATGTTATAATAACAGTTGGTCTATAAGATAATAAACGG hal CCAATGCAAAGCGTTCGTAGATTACTTATTAGAA.......................... ste GCAATGCCAA...........TATGATATAATAACA.....TTTATGATATAATAA.... -120 -110 -100 -90 -80 -70 sub ACGAAACATATAGAAATTACCATTATAAATGTGGAAAATCATGAAATAACAGAGGTGTTC hal ................TTAGTATTATTATTATCGGATAT..................... ste .....................................ATGATATAATAACACAGGCGTT. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...