Similar regions between promoters of ytfP

sub CAATATGACGTAATCGTAATCGGCGGAGGCCCTTCAGGCTTGATGGCTGCGATTGCAGCA hal ............................................................ ste ..ATACGACGTCATCATCGTCGGCGGCGGTCCGTCCGGGCTCATGGCGGCCATCGGCGCC -300 -290 -280 -270 -260 -250 sub GGAGAACAGGGCGCTGGCGTGTTGCTGATAGATAAAGGAAATAAATTAGGACGGAAACTC hal .............CAGGTCTATTGACCTTAGGTAAAAAGAATCAAATGGAAC........ ste GGCGAAGAAGGGGCGAAGGTGCTCTTGTTGGAAAAAGGAACGAAGCTCGGGCGCAAGCTC -240 -230 -220 -210 -200 -190 sub GCGATTTCCGGGGGCGGCCGCTGCAATGTGACGAACCGCCTTCCTGTGGAAGAAATTATC hal .......................................CTACCTGTGTATGAAAAGATA ste GCCATCTCCGGCGGCGGACGCTGCAACGTGACGAATCGGCTGCCGGTGGATGAAATGGTC -180 -170 -160 -150 -140 -130 sub AAGCACATCCCCGGCAACGGGCGTTTTTTAT-ACAGCGCGTTTTCTGAATTTAATAATGA hal A...................GCATTTTTCAGCAAATCTTGTTTTCT.............. ste CGCCATATTCCCGGCAACGGCCGCTTTTTAT-ACAGCGCCTTTTCCGTATTTAACAATGA -120 -110 -100 -90 -80 -70 sub GGACATTATCAAGTTTTTTGAAAACCTCGGCATTCAATTGAAGGAAGAGGATCACGGCCG hal .............TTTTTTCAAAAAATC................................ ste AGACATCATCCGCTTTTTTGAGCGGCTCGGCGTGCCGCTCAAGGAGGAAGACCACGGCCG -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...