Similar regions between promoters of ytgP

sub ATCTATCAGCAACACGCCAGCGCCCTGTTCTCCTGCTGCAATCGCAGCCATCAAGCCTGA hal ............................................................ ste .TCCAACAAGAGCACCTTCGCCCCTTCTTCGCCGGCGCCGATGGCCGCCATGAGCCCGGA -300 -290 -280 -270 -260 -250 sub AGGGCCTCCGCCGATTACGATTACGTCATATTGTTTCATCTTTATCATCAACTTTCTTTT hal .................CGAGTATATCAACTTGT......TTTATTCTCTTTTTTCCTT. ste CGGACCGCCGCCGACGATGATGACGTCGTATCC---CATGTTCATTCCACCCTTTCTTT. -240 -230 -220 -210 -200 -190 sub CATTTCGTGTGCGGACACCCGTCCGCAGTACTATTATAGCGAAAGAAAGCCGCTCCTTAA hal ............................................................ ste CATTTCATCCACCGGCAGCCG...................................TTCA -180 -170 -160 -150 -140 -130 sub ACGTCTTTTGCCGCGGACATGAATGTTCACAGGATTGCTTTTGTATTTATTACCGTCTAA hal ...TCCTTAGTCGAGTATATCAACTTGTACTATATC-CGTTTGTCTT............. ste ACGTCCATGGCTAGGGA.......................TTGTCATTTTCAACGTCCA. -120 -110 -100 -90 -80 -70 sub ATGCCCAGTTGTGGTAAAATAGAAAAGTTGAATCTTCGTAGAAAATGGTGATGAAGAAAC hal ......AGATGTGCTACAATGCAAGAAGTGAA............................ ste .....CAACTATGGTAAAATAGATACGTTG.............................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...