Similar regions between promoters of ytsJ

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTGCTGGAGCATAAAGGGGAAACAGGCGTTTATCTCTATTATGAAAGGCAAAAACAGA hal ....................................TGTACTACGAGAAACAAAGAAAAA ste ............................CCTTCCTATCTATTTTGATCAGAAAATTAAGA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGATTAAGCTACCTGAGTCGTTCCATATCAATGCAGATCACCAGGTGTTATATCGCTTAA hal CGATTCAGCTCCCGGA..........................................AG ste AAATAAA.CGACCTTGTTCCTTCC-TATCTATTTTGATCA.................... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>> >>>>>> sub AAGAGCTGTTGGGTCAAAA-AAACGTCGTTTTAAAACAG-TGGTAACGATTCGCTTTTTG hal AAGGGCTCGTCTGTTATAATAAAAGATGTTTTTATACAGGTGGTCA.........TGTTT ste .................................AAACGG-CTATACCGAGCCGATTTT.. -180 -170 -160 -150 -140 -130 sub TTATACAATTGGAGCAATTATGTGATCCTGTTTAAATATTCAGATAGATTTACTCCGCAG hal TTATACAGGTGGAGCCATTATATAAACTTTGTAAAATA...................... ste ............................................................ -120 -110 -100 -90 -80 -70 sub AATGCAGCAATCAACGC----AGCAGTATACGAATCAAAAAATATCCATAAGGAGTGTTT hal ............................................................ ste .ATTCAGCAATAAACGCCAAAAGCTGTATAAGGAACAA...................... -60 -50 -40 -30 -20 -10 sub AGGAGA hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...