Similar regions between promoters of ytvP
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CACGATTCCAGCCGGTCGATTTCGGCGTAGATTTTTTTCCTGAAAAAGTAGCCTGCCGCA hal ............................................................ ste ......TCGAGCCGATCGATTTCCCGGTACATCCGCTTCCGGTACA.............. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AACAGCGCAAGCAGTACAATTAATAATCCAATGACAAACTCCATAATGAGCCCCCTTGCT hal ............................................................ ste ............................................................ -240 -230 -220 -210 -200 -190 sub GTTTACCTTAATCTGTCAGGGTGTTTTATTTATTCAGAAAGATTTCAGGATATGTATTGA hal .........................TTTGTTATTCAACAAAATTTTA---TCTATTTTTC ste .......................TTTTATTTTTTTTACAAGAAT................ -180 -170 -160 -150 -140 -130 sub GAAAAACTGTCGTTTTCAT-TGTTATTATGATACCATGTAACAAACATTTTTTGACCAGA hal ACAAATCGACCTATGTCATATGATACCATGAAAATGTGTATTTTGTATCGTTTTATTCGC ste .AAAATATATGTTTTTCAA-TGTTTTTATGATACCATGTTAACGACATTTTTTGACCA-A -120 -110 -100 -90 -80 -70 sub AATCAAAAACTTTTTGTGCAAAATCGGCAGGATTTGACTATTTTTTCATGGGGTGACATC hal GATCAA...CTTCTTCTTAACAATCTGAAGG............................. ste AATTTTTATTTTTTTTACAAGAATCTTCACTATTT......................... -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...