Similar regions between promoters of yugI

>>>>>> sub CGGTGAGGGATATATTCCGTTGTTCATACGCAACCTCGATTGAACAGCTTCAAGAAGCGT hal ............................................................ ste CGGGGAAGGCTATAT-CCGCTGTTCATACGCATCATCGCTCGAACAGCTGCAAGAAGCCA -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]]]]] sub TAGTCAGAATGAAACGCTTCCTGCACAAAACAACATAAAAAAAGATACGAACCTTTTGTT hal .........................CATAACAAAAGGAAAAAA................. ste TTAAGCGAATGAAACGGTTTTTG......ATAATACAGAAACATAGACGAA......... -240 -230 -220 -210 -200 -190 ]]]]]] sub CGCATCCAATAAAAGGGGGGAATACTAGAAAGCCTTTGGTATTTTCAGTTTACCCCCTTT hal .........TAAAAGGGCATAACAAAAGGAA............................. ste ...........AAAGCGGGGAAGGCTATA............................... -180 -170 -160 -150 -140 -130 sub TTGCTGTGCATAAACCTGATTTTTTATAAAAAAGTTTTTCTTTGCGGAAATAAGACATGT hal ............AACCTGTGTTAAAATTAACAAGTT........................ ste ..GCTGTTCATACGCATCAT.....ATGAAACGGTTTTT..................... -120 -110 -100 -90 -80 -70 sub GTGATATAATTTTAAATTGCGTATAAACAGATATTTAATTTAACT-TAGGAGTTGTTATG hal .......................TAACAAGTTAATAAAT---AGT-TAGGAGATGTTTT. ste ......................AGAAACATAGACGAAATTCATCAATAGGAGTGTTT... -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...