Similar regions between promoters of yulF

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTTTTTGTAAATACTAGAATATTTAAACCAATCAGCAGCAGCACAAGCAAAAATAAAACA hal ...........TCCTAGTATATTTTAAC....................AAAAATAAAATA ste ................................................AAAAATAGA... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<<<<< sub AACTTATTATCCAAGAAGAATCGCTTGAATCTGCCGCTCCA--TGTTTGCAACGTCTCCA hal CGCTT....................................................... ste ...............AAGACCCAGATGAA-CTGCCGATCGAGCTGTATGAAA........ -240 -230 -220 -210 -200 -190 < sub CTATCGTTCCTCCGTCATACATAGTTTAATTAAATTGTACACTATCGTCCCTATAATGAA hal ...................................................TATACATAA ste .......................................................ATGAA -180 -170 -160 -150 -140 -130 sub AAATAAAAACCGTTAATTGCTGGAA--AAGCTTTCTCGGTTTTAACATTCTATTTATATC hal AAGGATTATTCGTCTATTGCTTAAA--GCGATTT----GTTATAA-ATTCTCCTTTTTT. ste AAATAGAATCCGCTGAAAGCTGAAGCCAAGCTCTCACGGT............TTCGTATC -120 -110 -100 -90 -80 -70 sub TATCATGTGATTTTGTTCTTTTTAAGCTATAATTTAGCTATATCATGCAAAAGGAGCGAT hal .........ATTCTCCTTTTTTTGAGCGCTATTTT......................... ste GATGAAGCGA...........TTATGGTACAATGATGGTTGATGACATCAAAGGGGGAAT -60 -50 -40 -30 -20 -10 sub ACGA hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...