Similar regions between promoters of yvbQ

>>> sub TGAAAACGCTTTAATGAAACAGCCCTTTCTACGGGAAGGGCTGTTTATATTGGGATGCAC hal ............................................................ ste ......CGCTTTAA.......................GGCCTGTTTTCATCGTGCCGC.. -300 -290 -280 -270 -260 -250 sub CATTTGGCGCTTTCTGTATAAGATAAAGATATATAGGATAAAATATTGCTGGATAAAACG hal ......GTGGTTTCTTGAAAAAATAAACTAATATCG........................ ste ............................................................ -240 -230 -220 -210 -200 -190 sub ACGCGGCATGAAAACTCTGCGAATATTGTCGATGAATTGGCTCTTAACAGTTGAATAAAC hal .....GCTTGAAAAATATCAGCTTATAATCCCTGTCGTGGCCATTAACGGT......... ste .CGTGACACGAAACATCT..GAATATGCTCGATGA......................... -180 -170 -160 -150 -140 -130 sub AATTCCACCCTGTTAAAATAATTAAAGAAAGCAGAAATGATTTTTTTTGGCTATGACGGG hal ........................................TATTTTTTGGCTTAATCGGG ste ...TCAATCCGCTTCAACCCAATAAAG................................. -120 -110 -100 -90 -80 -70 sub ACGTTTTTTGTCATAGCGGGACATATAATGTCCAGCAAAAAAGGAAGGAACGTTTGAGTC hal ACGTAAAATGTCTATGAGGGTCAAAAAACGTCCCGGATA..................... ste ...................GACAT-TGATGTCCTCCA....................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...