Similar regions between promoters of yvgR

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGAGCACGACCGCAGGCTTTTATATACTGCGTGCACCCGTGCGATGCACATGCTGGCGGT hal ............................................................ ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTTTATACAGGTGAAGCCAGTCCGTTTGTAACCGCTGTGCCGCCTCACTTATATCAGAT hal ............................................................ ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>> ]]]]]]]]]]]]]]]]]] sub TGCTGAATGAAGAGAAGGGAGTCCTTCTCTTTTTTCTATTTACATGAAGCATAGCCGTTT hal ......................................TTTACTTCAAGAGTGG--GTTT ste ............................................TAAAGTATACTTGTTT -180 -170 -160 -150 -140 -130 sub TATCATTAGGATTCTTAATAGTTATCATCATGTAAATATATTTTACTTAAGCCTAGTATT hal CTTCAAGTGAGTTCCTATT..............AAACCAATTTGACTTAT-CGGAATAAT ste TAT.ATTATAAAAATTAATAGTTTCAATAATTTATATTTATTTTACTAATGTTTTGTTTT -120 -110 -100 -90 -80 -70 sub CCGGTAAAGTTCAATTAGATGCAATTTTCGATCAGTTTATAACTTTGTGAGGTGGATACG hal GTAGTACGATGGAATTA--TTAAATTTAAAAAAGATTTTGTCATTTGTGAGGTGGATA.. ste GCGGTAAAGTGTAAATATA......................................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...