Similar regions between promoters of yvsG

sub TTATTTTTCTTTT---TTTGCACAGCTTCTTGAAGCGGATCATCTTTTAGAGCTGAACCA hal ...TTTTTCATGT---TT.....................TCCTCTTTTAGA......... ste ....TTTTCGTTTCATTTTGTTCAACTCCTTTACGCG....................... -300 -290 -280 -270 -260 -250 sub GCATCTTCAAGAGCTCCTTGGATTACGTTTTTTTCTTTTTCGGAACGTTTTCCTTTATCT hal .................................TCGTTATAGCAACGGGT-CCTTTGTCT ste .........................................GGATCGTTTTCGTTTCATT -240 -230 -220 -210 -200 -190 sub TTATTAAAGAAACCCATTCGTATCACCTCTTTTAAAAAATAGGTACATGTTTAAGATGCC hal TAGATCAAGACA.............CCTCTTTTAGA........................ ste TTGTTCAA......CATTTTGTTCAACTCCTTTA.......................... -180 -170 -160 -150 -140 -130 sub TTTTTCCTGAAAAATTATGCGGGATATTTTTTATCGTCCAAAGTCCTGTTGATCAAACAT hal ............................................................ ste ...................................................AACGAACAA -120 -110 -100 -90 -80 -70 sub ACATTCTCTTGATATATTTGTAATTCAGAGATTTTTTGCAAAAGATAAAAGG-AGAAGCG hal ...........................................GATAAAAGGGAGAAGGG ste ATATTCTTTT.ATATATTTGAAA..............GAAAACGATAAAAG......... -60 -50 -40 -30 -20 -10 sub GCAA hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...