Similar regions between promoters of yvyE

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTCGTCCTTGCTCCCGTCAACGGTTTTCAGCATCTTCATCAAAATAGAATCCAGCACTTT hal ............................................................ ste .......TTGCTGTGTTGAACGGTGTCGATCATTTTTTCGACAATCCGATCTAACTGCTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<< sub GGAATCCATCTTTGTTTTATTCATAATTTCCCTCCGTC--ACGGCGTTGTCATATATTTT hal ...........................................................T ste CACGTCCCACTGTTTTGCCTCAGCCATTTGCCAACCTCCAACAGCGCTGCCA........ -240 -230 -220 -210 -200 -190 sub TATTATAAATGTAATTGATCTGCAAATTATGTCGAATTATAATGAAAGAATGCGTATATT hal TTTTATAAATGAA.............TTTTTTCTCATTTTTATAAATGAATCCTT..... ste ......AAATTTGTTTGAAGGAAAAAAGTTGTCGATTTATAATAATAAAA........TT -180 -170 -160 -150 -140 -130 sub CTAGAAAAAAACATTTTTATATACTATCTACTCTTTATGATACCAAAATACGCACAAAAA hal ..................AGATAGTATAGTCTATTTACACTATCAAA............. ste GAAGGAAAAAAGTTGTCGATTTATAAT..........TCATGCAAAAAAATGAACAAAAT -120 -110 -100 -90 -80 -70 sub TTCTAAAGACTGTACGAATTTGTATAGGCAGTCTTTTATGCTTAGCAGGAGGGTCAGCTA hal .............ACGAATTTGCCTAAGC............................... ste T........................................................... -60 -50 -40 -30 -20 -10 sub GC hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...