Similar regions between promoters of ywjG

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTTGTCACAATGTCAAGCGCCTGCAGGCCGTTCGCAGCCTGAAACGTCTGGTAGCCTTC hal ............................................................ ste ........CGATTTCGAGCGCCTGCATGCCGTTGGCGGCCTGATACGTTACATACCCCTC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTATTGAACACTTCATTTAGCAAAATACGAATGCCGTATTGATCATCAACGATTAAAAT hal .........CACTCCTTTTACGAACAAGCCATTGTCCTAT...............AAAAT ste CCGCTGAAACACTTCATTGAGCAAAATGCGGATGCCATACTGGTCGTCGACAATCAAAAT -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<< sub TTTTTCATTCATCATTTTACACCCCAATATTATGATTTTCGTCAAAAGTAAGCAGTATTG hal GTTTTCA............CTCGCCAAGTTGCCCATTTTCATAAAAAG............ ste TTTGTTTCCCACAGTTATGCACCTCTATTCCCTGTTTT...................... -180 -170 -160 -150 -140 -130 sub TATGTATTCTGTTTGATTTTCCTATTTCCTTTAATTATAATAGTCTACTTTACGACATTT hal ...........TTTTCTTTTGCTGCTTCCTTTGAT......ATTGTCCTATGCTAGATTT ste ....TTTTCTTGTTG-TTTGCCGATTTTGTATAAT....................CATTT -120 -110 -100 -90 -80 -70 sub TCTGAGCATTTTCTCTTTTGTTGTATACTGATATTGTACGTTATAAAGGAGGATTCACTT hal TCT.......TTTTCTTTTGCTGCTTCCT...............AAAAGAGGATATACTT ste CCTGC---TTGCTTTTCTTGTTGTTTGCCGATTTTGTA...................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...