Similar regions between promoters of ywkC
>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGAAGCCGCAGGCCTGCGCCACCTCG--CCTTTACAGTCGGCAGCTTGGATAAAGCTGT hal ..............CTGAGCCATCTCCTTCACCTCCAGTCCTAAGGTTGG.......... ste .................CGCCCTCAAG--CCATTCCAGCCACCATGTTG........... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCAAGAGCTTCATGAAAAAGGAATCGAAACAGAGCCAATCAGAACAGATCCGCTGACCGG hal ........TTCATTAAGAATAAATCTA................................. ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAAGCGTTTCACCTTCTTTTTTGATCCTGACCAGCTTCCATTAGAACTGTATGAACAATA hal ....................TTTATCCTGAC............................. ste ...........CCATCTTTTTTCACC..................AAAAGTATAAACAAGA -180 -170 -160 -150 -140 -130 > sub ACAGTTTTTGAAGAAAAAAAGGAGATACCCACTTTCTTTGCCGAATCTTTTCTTGTTTTG hal ..ATTTCTTTACGTACATTCGTCGATTCCTACTTTCTTTGCCGAATGATTACTAGTTTTG ste ....TTTTCAAAGATGCAGAGGAAAAA.CCACTTTCTTTGCCGAATCAACACTAGTTTTG -120 -110 -100 -90 -80 -70 sub TCTAACGGGA-AGGGAACCGCATTCTATGGTCGAATACCTAGCTTAAAAGGAGGTATGGG hal TC-AACGAGACAGGGATCTGCCT..................................... ste TCGGCTGGGA-AGG.............................................. -60 -50 -40 -30 -20 -10 sub ATC hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...