Similar regions between promoters of ywlE
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCCATCGGCGTCAGCCTTGACAGCTTTTCCGTCGGCTTGAGCTTGGGGATATACGGCTCG hal .............GGCTTGGCCTCTTTA---TCGGCATGCGCTT................ ste .................TGCCTGCTTTTTTTGCGGCT....................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CATCCGCTCCTCACAATTACCCTGTTCGGGCTGTTCAGCATGATGTTGACATGGCTGGGC hal .......................GATGGGAGTTATGAGCACTGTACTTTCATGGCTTGGC ste ......................TTTTGCGGCTCTTCACCAAAAGTTGTACTTG....... -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTGCTGGTCGGAAAACAAGTGCAGTCATGGCTTGGCACATACAGCGAAGCGCTCGGGGGC hal CTCTTTATCGGCATGCGCTTCCAACGTTATGTGGGCCCTTACAGTGAGCTTCTTGGCGGT ste .........................CATTGCTTGTCAAGTACA................. -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCATATTAATCGTGTTTGGATTAAAGCTGCTTTTGCCAATTTAATATACCAATAAAAGA hal TTCATTTTATGCGGATTTGGCGTAAAATTGCTGCTCCCCTACTAAAAAA.....AAAAGA ste ..........TGGCGTTCGGGCTCAAGCTGCTTTTTCTA..................... -120 -110 -100 -90 -80 -70 sub AACGAAGTCGCCGTTTCTTTTTTCTTCATATATAATAGAGAAAAATAAGGGGTGACTGAC hal TAGGGA-TGATCGTCCCTTTTTTGTT.................................. ste ....AAGTTGTACTTGATTTTTTCTGAACATA............................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...