Similar regions between promoters of ywpF
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTTTTTGTTCAGATGAACCTCAAACACTTCTTTACGGCTTAACATATATGTTACTTCCTT hal TTTTTTGGACAG................................................ ste TTTTTTGTGCA......CCTCCACCGCACCTTTATG........................ -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTGAATCAAATGACTTTCAGAAGGAACGCCGTCAATATAAATTTCTTTTAAACGAAATTG hal ............ACTTTAAGAAAGAA.......AACGTTAACTTCTCATAAAGGAAA... ste .......................................AATTTCGTTT........... -240 -230 -220 -210 -200 -190 <<<<<< sub ATTCATACCACATCTCTCCGTAATCCATAGTCAGTTACAGTATAATGAAAAAATAGAAAT hal ..................CGCCATTAAGAGTTGCTGACACTTTAA-GAAAGAATAAA... ste .................................GATACAATTCAGCGAAAAAGGCGAAAT -180 -170 -160 -150 -140 -130 sub TATTAAATGTTTCGCTCATACAAAATTCTTTAGCCCCAACATTGCAGGATTTTTTCCTCG hal .................AAACGAAGGTATTTAGCGC.............TTTTCACTTTA ste .................................................TTCTTCCCTCG -120 -110 -100 -90 -80 -70 sub AAAACGTTTA--TGTTATAATGGAAGGCAAGAAAACTTTGGAAGTAATCGGGGTGAGAAG hal AAAACGTTAACTTCTCATAAAGGAA.......AAACGAAGGTATTTAGCGCAGGGCGAAG ste TC--CGCCTG--TGCTATAATCTTGGATAAGACAAC........................ -60 -50 -40 -30 -20 -10 sub AA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...