Similar regions between promoters of ywzC

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTGCCCTCCCTCACATGCCGAAGCACTGTTTCGGCTAAAAGCAGATCGTTTTCCTCTGAC hal ......................................................TCGGAC ste CTCCCTTCACGCACATGGCGCAATACGGTCTCTGCCAACAATAAATCGTCTTCTTCCGTC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<< sub CAAGCGTCTTGTCGCTGTTTTGTCATTTATCTCAACTCCCATTTTTCTTTTCATGGTATT hal CAAACGATGTGTGG...TTTTATCATCTA---CAAGTTCGTTTTTAC..TTAGTGCTTTT ste CAAGCGTCTTGCCGTTGTTT---CATTGTTCTCCACTCC--TTTTTCCCATGCTAGTAAA -240 -230 -220 -210 -200 -190 sub AGAATGTCCAGGTTGGAAAATATTTATACAAATTGGCTGAAAGAATAGGAGATACGAAGG hal ATCATCTACAAGTTCGT---TTTTACAATAAATAGGTTGAAGGGAAAGGAG......... ste AGGGTGGACCAAAAGGAAAAAAATTATAC............................... -180 -170 -160 -150 -140 -130 sub ATGGAGCGGCTTGCAGGAACAGTCGAATCCTTGTAAAATGAAGTGTGATGTGATTTTTTT hal ..................ACCGTCGCTTCATTATAGCATAGTTTTTCTTGCGAATTT... ste ....AGCGTCTTGCCG......TCCCATGCTAGTAAAAGG................TTCT -120 -110 -100 -90 -80 -70 sub TGAAACGTGATTTTAGGTTATTCACATAGATGAACATAGAAATGAAGGGAAGCGTACGTC hal ..........................................TGAAGGGAA......... ste TCAAACGCGTTT................................................ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...