Similar regions between promoters of yxbD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGATAACAGATTTAGAGAACTCGCTGTAAATCATCAATCCCTACATGAATCGTCCAAAT hal .........GATCAAGAGAAATC......................ATCAAGCGCTCAAAC ste .........................................................ATT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CAGAGTTAAATGGATATTTGGAAAGTCTGATTCAAACGTTATCAGAGAACGCAGAGACAT hal TTGAATTAGAAGATGATTT..AGAGTCTTATTAAAA..TTAACAGAGA----TGAGAGAT ste CCCAGTTACACTCACGTATGGAA.......TTCAATCGTT-TCAACGAACGATGATGCA. -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>> sub TGACCCCAGAGCAAATCT---TCCAATCTCAGGATTCAGAT-TTTGATCCTTATCAATCC hal CGGTCCTTCCGCTGATCTCTTTTTAATTTGTGAAAATAGATCTTTTATCCTAACTAAT.. ste ..........................................TTTGCTGTTTTTCAATC. -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACGCAATTGGTATTCAGACAGCTTTTGACAAGTTATAAGTTCTAGTAAATACTAGATAAG hal ............................................................ ste ............................................................ -120 -110 -100 -90 -80 -70 sub GGGATTAATGACATAAAATAGGTTGTTAATTCT--CTTATTTTTGTTCAGCTAAAAGGAG hal ....TTAATTTGTGAAAATAGATCTTTTATCCTAACTAATTTTT................ ste ........TGACACAGAGGAGGATG.TAAAGCT--CTTATTCTAG............... -60 -50 -40 -30 -20 -10 sub GAAAAT hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...