List of Promoters

These promoters are classified according to the functional classification of their gene products by SubtiList.

  I CELL ENVELOPE AND CELLULAR PROCESSES

    I.1 CELL WALL
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
cwlC
N-acetylmuramoyl-L-alanine amidase 1 3 No
cwlD-Pg
N-acetylmuramoyl-L-alanine amidase 1 3 No
dacB
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*) 1 2 No
dacF
D-alanyl-D-alanine carboxypeptidase (penicilin binding protein) 3 2 No
dltA ipa-5r dae D-alanyl-D-alanine carrier protein ligase (Dcl) 2 No No
gcaD tms tms26 UDP-N-acetylglucosamine pyrophosphorylase 1 3 No
gtaB
UTP-glucose-1-phosphate uridylyltransferase 1 3 No
lytD cwlG N-acetylglucosaminidase (major autolysin) (CWBP90) 1 No No
cwlF-Ph
phosphatase-associated protein (CWBP33) 1 2 No
pbpD
penicillin-binding protein 4 1 No No
pbpE
penicillin-binding protein 4* 4 No No
pbpF ponA penicillin-binding protein 1A 1 2 No
spoVD
penicillin-binding protein 3 3 Yes
tagA
polyglycerol phosphate assembly and export (involved in teichoic acid linkage unit synthesis) (teichoic acid biosynthesis) 3 No Yes
dinC dinC polyglycerol phosphate assembly and export (teichoic acid biosynthesis) 2 No Yes
tagD
glycerol-3-phosphate cytidylyltransferase 3 2 Yes
tuaA yvhA biosynthesis of teichuronic acid 1 No Yes
wapA
cell wall-associated protein precursor (CWBP200, 105, 62) 1 No Yes

    I.2 TRANSPORT/BINDING PROTEINS AND LIPOPROTEINS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
appA
oligopeptide ABC transporter (oligopeptide-binding protein) 1 2 No
araE yvbR permease 3 No No
bglP sytA phosphotransferase system (PTS) beta-glucoside-specific enzyme IIABC component 2 2 Yes
blt acfA bmr2 bmt multidrug-efflux transporter 2 2 No
bmr bmr1 multidrug-efflux transporter 2 No No
citM yflO secondary transporter of the Mg2+/citrate complex 1 No No
dppA dciAA dipeptide ABC transporter 2 No Yes
fhuD
ferrichrome ABC transporter (ferrichrome-binding protein) 1 2 No
gabP-P1
gamma-aminobutyrate (GABA) permease 1 No No
gabP-P2
gamma-aminobutyrate (GABA) permease 1 No Yes
levD sacL phosphotransferase system (PTS) fructose-specific enzyme IIA component 5 No Yes
licB celA phosphotransferase system (PTS) lichenan-specific enzyme IIB component 2 3 Yes
msmX yxkG multiple sugar-binding transport ATP-binding protein 1 3 No
narK
nitrite extrusion protein 1 2 Yes
nasA
nitrate transporter 3 2 Yes
nrgA
ammonium transporter 2 2 Yes
oppA spo0KA oligopeptide ABC transporter (binding protein) 1 2 No
opuE-P2
proline transporter 1 2 No
ptsG ptsX crr phosphotransferase system (PTS) glucose-specific enzyme IIABC component 1 3 No
sacP ipa-49d phosphotransferase system (PTS) sucrose-specific enzyme IIBC component 1 2 No
treP treB phosphotransferase system (PTS) trehalose-specific enzyme IIBC component 3 2 Yes
ydbH
similar to C4-dicarboxylate transport protein 2 No No
ydhO
similar to cellobiose phosphotransferase system enzyme II 1 No No
ytgA
similar to ABC transporter (membrane protein) 1 2 No
yxkJ
similar to metabolite-sodium symport 1 No No

    I.3 SENSORS (SIGNAL TRANSDUCTION)
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
kinA
two-component sensor histidine kinase 2 No No
kinB
two-component sensor histidine kinase 1 No Yes
kinC ssb two-component sensor histidine kinase 4 No Yes

    I.4 MEMBRANE BIOENERGETICS (ELECTRON TRANSPORT CHAIN AND ATP SYNTHASE)
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
ctaA
heme-containing membrane protein 2 2 No
ctaB
cytochrome caa3 oxydase assembly factor 1 2 No
hmp ykiA flavohemoglobin 1 3 No
narG
nitrate reductase (alpha subunit) 1 2 Yes
petC bfcA petC menaquinol:cytochrome c oxidoreductase (iron-sulfur subunit) 1 3 No
resA ypxA essential protein similar to cytochrome c biogenesis protein 2 2 No
trxA trx thioredoxin 1 3 No
ywcG ipa-43d similar to NADPH-flavin oxidoreductase 1 2 No

    I.5 MOBILITY AND CHEMOTAXIS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
cheV
modulation of CheA activity in response to attractants (chemotaxis) 1 2 No
flgM
anti-sigma factor repressor of sigma-D-dependent transcription 1 3 No
fliD
flagellar hook-associated protein 2 (HAP2) 1 No No
hag
flagellin protein 1 3 No
motA mot motility protein A 1 No No
tlpC
methyl-accepting chemotaxis protein 1 No No
yvyF yviB similar to flagellar protein 1 3 No

    I.6 PROTEIN SECRETION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
lytA lppX membrane bound lipoprotein 2 No No

    I.7 CELL DIVISION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
divIB dds tms-12 cell-division initiation protein 1 No No
ftsA-P1
cell-division protein 1 2 No
ftsA-P2
cell-division protein 1 2 No
ftsA-P3
cell-division protein 1 2 No
ftsA spoIIN cell-division protein 2 2 No
yjoB
similar to cell-division protein FtsH homolog 1 No No

    I.8 SPORULATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
bofA
integral membrane protein 3 2 Yes
bofC
forespore regulator of the sigma-K checkpoint 2 No No
cgeA cgeAA involved in maturation of the outermost layer of the spore 6 No Yes
cgeC cgeBA involved in maturation of the outermost layer of the spore 2 No Yes
cotA pig spore coat protein (outer) 3 2 No
cotB
spore coat protein (outer) 3 No Yes
cotC
spore coat protein (outer) 3 No Yes
cotD
spore coat protein (inner) 6 3 Yes
cotE-P1
morphogenic protein 1 3 No
cotE-P2
morphogenic protein 2 3 No
cotF
spore coat protein 1 2 No
cotG
morphogenetic protein 2 No Yes
cotH ywrH spore coat protein (inner) 1 No No
cotM yneL spore coat protein (outer) 1 2 No
cotS
spore coat protein 1 No No
cotT
spore coat protein (inner) 1 No No
cotV
spore coat protein (insoluble fraction) 2 No Yes
cotX-Px
spore coat protein (insoluble fraction) 1 2 No
cotX
spore coat protein (insoluble fraction) 2 2 Yes
cotY
spore coat protein (insoluble fraction) 3 No Yes
phrC
regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) 1 No No
rapC yclL response regulator aspartate phosphatase 1 2 No
rapD ywpA response regulator aspartate phosphatase 1 No No
rapE yqcH response regulator aspartate phosphatase 1 No No
sinI
antagonist of SinR 1 2 No
sinI-P1
antagonist of SinR 2 2 Yes
spo0B spo0D sporulation initiation phosphoprotein 1 2 No
spo0E
negative sporulation regulatory phosphatase 2 2 Yes
spoIID spoIIC required for complete dissolution of the asymmetric septum (stage II sporulation) 2 2 No
spoIIE spoIIH spoIIK serine phosphatase 5 3 Yes
spoIIM
required for dissolution of the septal cell wall (stage II sporulation) 1 3 No
spoIIP
required for dissolution of the septal cell wall (stage II sporulation) 1 2 No
spoIIQ ywnI required for completion of engulfment 1 3 No
spoIIR ipc-27d csfX required for processing of pro-sigma-E (extracellular signal interacting with SpoIIGA?) (stage II sporulation) 1 3 No
spoIVA-P1
required for proper spore cortex formation and coat assembly (stage IV sporulation) 1 3 No
spoIVA-P2
required for proper spore cortex formation and coat assembly (stage IV sporulation) 1 3 No
spoIVB
intercompartmental signalling of pro-sigma-K processing/activation in the mother-cell; essential for spore cortex and coat formation (stage IV sporulation) 3 2 No
spoIVCA cisA site-specific DNA recombinase 3 No Yes
spoIVFA bofB spoVL inhibitor of SpoIVFB 1 3 No
spoVB spoIIIF involved in spore cortex synthesis (stage V sporulation) 1 3 No
spoVE-P2
required for spore cortex synthesis (stage V sporulation) 1 3 No
spoVFA dpaA dipicolinate synthase subunit A 1 3 No
spoVG-P1
required for spore cortex synthesis (stage V sporulation) 2 3 No
spoVG-P2
required for spore cortex synthesis (stage V sporulation) 1 3 No
spoVG
required for spore cortex synthesis (stage V sporulation) 1 3 Yes
spoVID
required for assembly of the spore coat (stage VI sporulation) 1 3 No
spoVK-P1
disruption leads to the production of immature spores (stage V sporulation) 1 2 No
spoVK-P2
disruption leads to the production of immature spores (stage V sporulation) 1 2 No
spoVM
required for normal spore cortex and coat synthesis (stage V sporulation) 1 3 No
spoVR
involved in spore cortex synthesis (stage V sporulation) 1 No No
sspA
small acid-soluble spore protein (alpha-type SASP) 2 2 No
sspB
small acid-soluble spore protein (beta-type SASP) 2 3 No
sspC
small acid-soluble spore protein (alpha/beta-type SASP) 1 No No
sspD
small acid-soluble spore protein (alpha/beta-type SASP) 2 3 No
sspE
small acid-soluble spore protein (gamma-type SASP) 3 2 No
sspF
small acid-soluble spore protein (alpha/beta-type SASP) 1 3 No
cse15 cse15 similar to sporulation protein sigma-E-controlled 1 No No
csk22 csk22 similar to sporulation membrane protein sigma-K-controlled 1 No No
yrbA
similar to spore coat protein 1 3 No

    I.9 GERMINATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
gerD
germination response to L-alanine and to the combination of glucose, fructose, L-asparagine, and KCl (early stage) 2 2 No
gpr
spore protease 3 2 No

    I.10 TRANSFORMATION/COMPETENCE
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
comC
DNA-binding protein 3 2 Yes
mecA
negative regulator of competence 2 3 Yes

  II INTERMEDIARY METABOLISM

    II.1 METABOLISM OF CARBOHYDRATES AND RELATED MOLECULES

      II.1.1 SPECIFIC PATHWAYS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
ackA
acetate kinase 2 3 Yes
acoA yfjK acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) 2 3 No
acsA
acetyl-CoA synthetase 3 3 Yes
acuA
acetoin dehydrogenase 2 3 Yes
alsS
alpha-acetolactate synthase (pH6) 3 No No
amyE amyA alpha-amylase 1 No Yes
araA
L-arabinose isomerase 3 2 No
araB
L-ribulokinase 1 No No
licS bgl licS endo-beta-1,3-1,4 glucanase 2 2 No
galT ipa-36d galactose-1-phosphate uridyltransferase 1 No No
gdh
glucose 1-dehydrogenase 2 No No
glgB
1,4-alpha-glucan branching enzyme 1 No No
glpD
glycerol-3-phosphate dehydrogenase 2 2 No
gutB
sorbitol dehydrogenase 2 2 No
iolB yxdB myo-inositol catabolism 1 2 No
kdgA
deoxyphosphogluconate aldolase 1 No No
lacA yvfN beta-galactosidase 1 No No
sacB
levansucrase 4 No Yes
sacX ipa-14r sacS negative regulatory protein of SacY 5 No Yes
xylA
xylose isomerase 3 2 Yes
yjmA
similar to glucuronate isomerase 1 2 No
yrhH
similar to methyltransferase 1 No No

      II.1.2 MAIN GLYCOLYTIC PATHWAYS

      II.1.3 TCA CYCLE
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
citA citA1 citrate synthase I 2 No No
citB
aconitate hydratase 3 2 Yes
citG-P2
fumarate hydratase 1 3 No
odhA citK 2-oxoglutarate dehydrogenase (E1 subunit) 1 2 No
sdhA citF succinate dehydrogenase (flavoprotein subunit) 1 No No

    II.2 METABOLISM OF AMINO ACIDS AND RELATED MOLECULES
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
ald spoVN L-alanine dehydrogenase 1 3 No
ansA
L-asparaginase 2 No No
aprE sprE serine alkaline protease (subtilisin E) 10 2 Yes
aprE-P2
serine alkaline protease (subtilisin E) 1 2 No
argC
N-acetylglutamate gamma-semialdehyde dehydrogenase 4 3 Yes
asd
aspartate-semialdehyde dehydrogenase 1 3 No
gltA
glutamate synthase (large subunit) 5 2 Yes
ilvB
acetolactate synthase (acetohydroxy-acid synthase) (large subunit) 1 3 No
ilvC
ketol-acid reductoisomerase (acetohydroxy-acid isomeroreductase) 1 No Yes
iolA mmsA yxdA methylmalonate-semialdehyde dehydrogenase 2 3 Yes
lysC ask aecA aspartokinase II alpha subunit (aa 1->408) and beta subunit (aa 246->408) 1 2 No
nasB nasBA assimilatory nitrate reductase (electron transfer subunit) 3 No Yes
nasD nasBC nirB assimilatory nitrite reductase (subunit) 2 3 No
nprE
extracellular neutral metalloprotease 5 No Yes
rocA ipa-76d pyrroline-5 carboxylate dehydrogenase 4 No Yes
rocD
ornithine aminotransferase 4 3 Yes
trpE
anthranilate synthase 2 3 No
ureA-P2
urease (gamma subunit) 1 3 No
ureA-P3
urease (gamma subunit) 5 3 Yes

    II.3 METABOLISM OF NUCLEOTIDES AND NUCLEIC ACIDS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
cdd
cytidine/deoxycytidine deaminase 1 3 No
dra
deoxyribose-phosphate aldolase 2 2 No
guaA guaB GMP synthetase 1 3 No
nucA comI nuclease 1 No No
nucB
nuclease 1 No No
purA
adenylosuccinate synthetase 2 2 No
purE
phosphoribosylaminoimidazole carboxylase I 1 2 Yes
purF purB phosphoribosylpyrophosphate amidotransferase 1 No No
pyrC
dihydroorotase 1 No Yes
relA
GTP pyrophosphokinase 1 2 No

    II.4 METABOLISM OF LIPIDS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
lcfA
long chain acyl-CoA synthetase 1 3 No
mmgA yqiL acetyl-CoA acetyltransferase 2 2 Yes

    II.5 METABOLISM OF COENZYMES AND PROSTHETIC GROUPS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
bioW
6-carboxyhexanoate-CoA ligase 1 No No
dhbA entA 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 1 No No
hemA
glutamyl-tRNA reductase 1 3 No
menB
dihydroxynapthoic acid synthetase 1 No No
menE
O-succinylbenzoic acid-CoA ligase 1 2 No
nadB
L-aspartate oxidase 1 2 No
nifS
required for NAD biosynthesis 1 3 No
ribG
riboflavin-specific deaminase 2 No Yes

    II.6 METABOLISM OF PHOSPHATE
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
phoA phoAIV alkaline phosphatase A 3 3 Yes
phoB-Pv
alkaline phosphatase III 2 No Yes
phoD ycbS phosphodiesterase/alkaline phosphatase D 1 No No
xpaC
hydrolysis of 5-bromo 4-chloroindolyl phosphate (X-phos) 1 No No

    II.7 METABOLISM OF SULPHUR

  III INFORMATION PATHWAYS

    III.1 DNA REPLICATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
dnaA dnaH dnaJ initiation of chromosome replication (DNA synthesis) 1 3 No

    III.2 DNA RESTRICTION/MODIFICATION AND REPAIR
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
adaA
methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) 2 2 No
alkA
DNA-3-methyladenine glycosylase 2 No No
dinB
nuclease inhibitor 1 2 Yes
dinA dinA uvrA excinuclease ABC (subunit B) 1 3 Yes

    III.3 DNA RECOMBINATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
addA recE5 ATP-dependent deoxyribonuclease (subunit A) 2 No Yes
recA recE multifunctional SOS repair regulator 3 2 Yes

    III.4 DNA PACKAGING AND SEGREGATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
gyrB novA DNA gyrase (subunit B) 1 3 No
hbs dbpA hbsU non-specific DNA-binding protein HBsu 1 2 No

    III.5 RNA SYNTHESIS

      III.5.1 INITIATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
rpoD-P3
RNA polymerase major sigma-43 factor (sigma-A) 1 3 No
rpoD-P4
RNA polymerase major sigma-43 factor (sigma-A) 1 3 No
sigB rpoF RNA polymerase sigma-37 factor (sigma-B) 2 No No
sigD flaB RNA polymerase sigma-28 factor (sigma-D) 1 No No
spoIIIG spoIIIG RNA polymerase sporulation-specific sigma factor (sigma-G) 3 3 No
spo0H spo0H RNA polymerase sigma-30 factor (sigma-H) 2 2 No
sigW ybbL RNA polymerase ECF-type sigma factor (sigma-W) 1 3 No
sigX ypuM RNA polymerase ECF-type sigma factor (sigma-X) 1 No No
sigM sigM similar to RNA polymerase ECF-type sigma factor 1 No No

      III.5.2 REGULATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
abh ylxT yzaA transcriptional regulator 1 No No
abrB cpsX transcriptional regulator 2 3 Yes
abrB-P2
transcriptional regulator 3 3 Yes
acoR yfjG yzcB transcriptional regulator 1 2 No
araR araC yvbS transcriptional regulator (LacI family) 2 2 No
azlB yrdG transcriptional regulator (Lrp/AsnC family) 1 No No
comA srfB comAA two-component response regulator 1 No No
comK
competence transcription factor (CTF) 5 No Yes
comQ
transcriptional regulator 1 No No
degU sacU iep two-component response regulator 1 3 No
fnr
transcriptional regulator (FNR/CRP family) 1 2 No
fruR
transcriptional regulator (DeoR family) 1 3 No
gerE
transcriptional regulator 2 3 No
glnR
transcriptional regulator 5 2 Yes
glpP
transcription antiterminator 1 No No
gltC
transcriptional regulator (LysR family) 2 2 Yes
gltR yrdL transcriptional regulator (LysR family) 2 No Yes
gntR
transcriptional regulator (GntR family) 5 No Yes
hpr catA scoC transcriptional regulator 1 2 No
hutP hutP1 transcriptional regulator 5 2 Yes
iolR
transcriptional regulator (DeoR family) 1 No No
kdgR
transcriptional regulator (LacI family) 2 2 No
dinR lexA transcriptional regulator 3 2 Yes
lmrA lin-2 yccB transcriptional regulator 1 No No
lrpC ydaI transcriptional regulator (Lrp/AsnC family) 1 2 No
lytR
membrane-bound protein 2 3 No
mta ywnD transcriptional regulator 1 3 No
phoP
two-component response regulator 2 3 No
purR yabI transcriptional regulator 1 3 No
rbsR
transcriptional regulator (LacI family) 3 3 Yes
resD ypxD two-component response regulator 1 3 No
senS
transcriptional regulator 1 No No
spo0A-P2
two-component response regulator 1 3 No
spo0A-Ps
two-component response regulator 1 3 Yes
spo0A-Pv
two-component response regulator 2 3 Yes
spo0A spo0C spo0G spoIIL sof-1 two-component response regulator 3 3 Yes
spo0F-P2
two-component response regulator 4 3 Yes
spoIIID
transcriptional regulator 1 No No
spoVT yabL transcriptional regulator 2 3 No
tenA
transcriptional regulator 2 2 No
xylR
transcriptional regulator 1 3 No

      III.5.3 ELONGATION

      III.5.4 TERMINATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
nusA
transcription termination 1 No No

    III.6 RNA MODIFICATION

    III.7 PROTEIN SYNTHESIS

      III.7.1 RIBOSOMAL PROTEINS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
rpmH
ribosomal protein L34 1 3 No
yvyD yviI similar to ribosomal protein S30AE family 2 2 No

      III.7.2 AMINOACYL-TRNA SYNTHETASES
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
gltX
glutamyl-tRNA synthetase 1 3 No
thrS
threonyl-tRNA synthetase 1 3 No
tyrS
tyrosyl-tRNA synthetase 1 2 No

      III.7.3 INITIATION

      III.7.4 ELONGATION

      III.7.5 TERMINATION

    III.8 PROTEIN MODIFICATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
ppiB cypBS peptidyl-prolyl isomerase 1 3 No
yteI
similar to protease IV 1 3 No

    III.9 PROTEIN FOLDING
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
dnaK
class I heat-shock protein (chaperonin) 2 3 Yes

  IV OTHER FUNCTIONS

    IV.1 ADAPTATION TO ATYPICAL CONDITIONS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
clpC mecB class III stress response-related ATPase 2 3 No
clpE-P1
ATP-dependent Clp protease-like 3 2 No
clpE-P2
ATP-dependent Clp protease-like 2 2 No
clpP yvdN ATP-dependent Clp protease proteolytic subunit (class III heat-shock protein) 1 2 No
clpX
ATP-dependent Clp protease ATP-binding subunit (class III heat-shock protein) 1 3 No
csbB yfhN stress response protein 1 2 No
cspB
major cold-shock protein 2 No Yes
ctc
general stress protein 1 3 No
degQ sacQ hyperproduction of levansucrase and other extracellular degradative enzymes (aprE, nprE, amyE) 3 2 Yes
degR prtR activation of degradative enzymes (aprE, nprE, sacB) 3 No Yes
dps ytkB stress- and starvation-induced gene controlled by sigma-B 1 3 No
gsiB
general stress protein 2 No No
gspA ipa-12d ywaG general stress protein 1 2 No
lonA lon class III heat-shock ATP-dependent Lon protease 1 2 No
mrgA
metalloregulation DNA-binding stress protein 1 No No
ycdH
similar to adhesion protein 1 2 No
ytxG csb40 similar to general stress protein 2 3 No

    IV.2 DETOXIFICATION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
katA kat-19 vegetative catalase 1 1 No No
katE katE catalase 2 1 2 No
katX yxlI catalase 1 2 No
ycsF
similar to lactam utilization protein 2 3 No

    IV.3 ANTIBIOTIC PRODUCTION
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
srfAA comL surfactin synthetase 5 No Yes

    IV.4 PHAGE-RELATED FUNCTIONS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
xkdB ykxB PBSX prophage 4 No No
xtmA ykxF PBSX defective prophage terminase (small subunit) 1 2 No
yobO
similar to phage-related pre-neck appendage protein 1 2 No

    IV.5 TRANSPOSON AND IS

    IV.6 MISCELLANEOUS
Promoter Synonym Description # Regulatory
elements
# Sequences
in Alignmnent
Figure
csbA
putative membrane protein 1 3 No
veg
veg 1 2 No
  CATEGORY NOT ASSIGNED
Promoter Synonym Description # Elements # Sequences
in Alignmnent
Figure
spa

1 No No
gsiA

2 No Yes
comE

3 No Yes
comG

3 No Yes
rbs

1 No No
divI

1 No No
ydaR
similar to hypothetical proteins 1 No No
rrnBP1

1 No No
rrnBP2

1 No No
f29G2

1 No No
ysdB
ysdB 1 2 No
ydbS
ydbS 1 3 No
yxjC
similar to hypothetical proteins from B. subtilis 1 2 No
yeaA ydjQ alternate gene name: ydjQ 1 No No
cse60 cse60 alternate gene name: cse60 1 No No
yxjI
yxjI 1 No No
yxjJ
yxjJ 1 No No
yxzE
yxzE 1 No No
fspp1epr

1 No No
yuaF
yuaF 1 3 No
ffhrpsp

1 No No
hsmB1

1 No No
ptsXHI

1 3 No
glpTQ

2 No No
ssd

1 No No
pyr

1 2 No
sdh

1 No No
f105epr

1 No No
groE

2 No Yes
exuP1

1 No No
exuP2

1 No No
glpFK

2 2 No
rrnDP1

1 No No
rrnDP2

1 No No
rrnG

1 No No
xynC

1 No No
rrnW

1 No No
phoPR

1 3 Yes
ydfK
similar to hypothetical proteins 1 2 No
spoIVF

1 No No
yciC
similar to hypothetical proteins 1 3 No
Unknown

1 No No
fsp82

1 No No
rpsd

1 2 No
pstS

1 No Yes
gspB

1 No No
tet

1 No No
spoIIIA

1 No No
cotJ

1 No No
yobJ
yobJ 1 No No
ywbN ipa-29d similar to hypothetical proteins 1 No No
ykzB
ykzB 2 2 No
sboA

2 No No
spoIIA

6 No Yes
ywrE
ywrE 1 3 No
spoIIG

8 No Yes
amyLY

1 No No
dnaEP2

1 3 No
men

1 No No
flaAorf3

1 No No
f01e22

1 No No
flaAorf7

1 No No
f01e3

1 No No
lonS1

1 No No
lonS2

1 No No
G4

1 No No
bsuB1

1 No No
rrnOP1

1 No No
yabG
yabG 1 3 No
f29A1

1 No No
rrnOP2

1 No No
f29A3

1 No No
trnS

1 No No
f29Ec3

1 No No
f01epr

1 No No
yfhL
yfhL 1 No No
spoIVCB spoIVCB cisB spoIIIC spoIVD spoIVE RNA polymerase sporulation-specific sigma factor (sigma-K) 7 No Yes
f82-129

1 No No
f105

1 No No
sspG

3 No No
sspJ

1 No No
f29B2

1 No No
yknW
yknW 1 3 No
ykoL
ykoL 1 2 No
gerA

3 No No
gerB

2 No No
tycA

3 No Yes
ptb

3 No No
ars

1 No No
mrgC

1 No No
gluB

1 No No
comF-P1

4 No Yes
rrnAP1

1 No No
rrnAP2

1 No No
degSU

1 3 No
f82-156

1 No No
flaAorf10-1

1 No No
flaAorf10-2

1 No No
spoVA

2 No No
f29G3a

1 No No
f29G3b

1 No No
fsprmtas

1 No No
hut

1 No No
yvlA
yvlA 1 2 No