SigD

We searched for SigD binding sites in the upstream region of orthologous genes using the Position-Specific Scoring Matrix for SigD.

Transcription Factor Regulated gene organism position cis-element score
SigD hag Bsu -123..-98 AACAAAATCAGAGACAATCCGATAT 7.875370
SigD hag Bha -139..-112 TAAACTCCTGTGAAATCGTGTCGATAT 10.043090
SigD hag Cac -106..-79 TAAAGTGATAAAGAAATGCTCCGATAT 10.638140
SigD hag Eco -60..-33 TCAAGTCCGGCGGGTCGCTGCCGATAA 9.916110
SigD hag EcZ -60..-33 TCAAGTCCGGCGGGTCGCTGCCGATAA 9.916110
SigD hag Ecs -60..-33 TCAAGTCCGGCGGGTCGCTGCCGATAA 9.916110
SigD hag Ype -142..-166 TAAAAGCTGGGCCATGCCCGGTAT 7.679680
SigD hag Pae -120..-94 AAAGCTCCGCCGGGAAACGCCGATAA 7.659340
SigD hag jHp -81..-57 AAAATTTCAAACTTTAACCGATAA 7.519220
SigD hag Mlo -164..-188 TAATTCGAGAAAAATCGCCGATGT 8.512180
SigD hag Aae -63..-37 AAAACTTTTTTCTTTTCCTCCGATAA 7.710470
SigD cheV Bsu -64..-39 CACTTTTTACAAATTACGCCGATAT 7.618130
SigD cheV Mtu -104..-77 TTCACTCTGGCCTTGTTGTGCCCATAT 7.948630
SigD cheV Ype -16..-42 TTAACAACAGAATATACTACCGATAA 8.329370
SigD cheV Sty -78..-54 TCAAATTGTGATTGAAGCCGACAT 8.208490
SigD cheV Vch -74..-50 TTCAAGCCATTCCGTTGCCGATAC 7.938290
SigD cheV Pae -52..-26 GAAACACAGCAGTATATCGCCGGTAT 7.603330
SigD cheV Rso -74..-47 TCAAGAAATGTTGCGGGCGGCCGATGT 8.208490
SigD cheV Bme -192..-220 TAAAAACAATATGCTTCCATGCCGAGAG 7.717770
SigD cheV Mlo -93..-67 TTCAGCGAAGACGAGGCGGCCGAGAT 7.721180
SigD cheV Ccr -100..-74 TCATTCGTTAGCTATGCCGCCGATAT 9.916110
SigD cheV Syn -155..-127 GAAAGCACCCAGAATATTTGGCCGTTAT 8.056460
SigD cheV Nos -60..-84 TCAAAATCATCAATTTGGCGATAT 8.510060
SigD cheV Bsu -64..-39 CACTTTTTACAAATTACGCCGATAT 7.618130
SigD cheV Mtu -104..-77 TTCACTCTGGCCTTGTTGTGCCCATAT 7.948630
SigD cheV Ype -16..-42 TTAACAACAGAATATACTACCGATAA 8.329370
SigD cheV Sty -78..-54 TCAAATTGTGATTGAAGCCGACAT 8.208490
SigD cheV Vch -74..-50 TTCAAGCCATTCCGTTGCCGATAC 7.938290
SigD cheV Pae -52..-26 GAAACACAGCAGTATATCGCCGGTAT 7.603330
SigD cheV Rso -74..-47 TCAAGAAATGTTGCGGGCGGCCGATGT 8.208490
SigD cheV Bme -192..-220 TAAAAACAATATGCTTCCATGCCGAGAG 7.717770
SigD cheV Mlo -93..-67 TTCAGCGAAGACGAGGCGGCCGAGAT 7.721180
SigD cheV Ccr -100..-74 TCATTCGTTAGCTATGCCGCCGATAT 9.916110
SigD cheV Syn -155..-127 GAAAGCACCCAGAATATTTGGCCGTTAT 8.056460
SigD cheV Nos -60..-84 TCAAAATCATCAATTTGGCGATAT 8.510060
SigD yvyC Bsu -58..-32 TAATCTTATCTCGACTTAGTCGATAT 8.881470
SigD yvyC Bha -66..-39 TAAAGTTTAGGAATGAGATACCGATAT 10.446890
SigD yvyC Hpy -92..-68 ACAAATCGTTTTTATTGCCGATAT 9.311680
SigD yvyC jHp -91..-67 AACAAATCGTCTTTTTGCCGATAT 9.780270
SigD yvyC Aae -63..-37 AAAACTTTTTTCTTTTCCTCCGATAA 7.710470
SigD tlpA Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD tlpA Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD tlpA Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD tlpA Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD tlpA Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpA EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpA Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD tlpA Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD tlpA Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD tlpA Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD tlpA Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD tlpA Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD tlpA Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD tlpA Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD tlpA Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD yjbJ Bsu -81..-57 TTCAGTTCTTTGCTCAGCCAATAT 8.016350
SigD yjbJ Nme -167..-143 TTCAAACAGATTGCCTGCCGATAT 10.590420
SigD yjbJ NmA -166..-142 TTCAAACAGATTGCCTGCCGATAT 10.590420
SigD yjbJ Rso -110..-82 TCAAGCCATCCCCGGGGATGGCCGATAA 9.916110
SigD yjbJ Rco -177..-150 TAATTTGTTGGATATGGTACCCGATAT 9.387300
SigD motA Bsu -68..-41 TAAAGTTCCGGGCACCAAAACCGATAT 10.446890
SigD motA Cac -40..-66 TAAAATTTATATATGTATTCCAATAT 8.064070
SigD motA Pae -85..-58 TATAGTCTTGCGGCTAGCAACCGATAA 7.674910
SigD motA Ccr -43..-19 TTAATCGGCATGATGCGCCGATAA 10.425520
SigD motA Aae -38..-12 TAAATTTTAAAAAGGAAATCCGATAA 9.476520
SigD yoaH Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD yoaH Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD yoaH Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD yoaH Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD yoaH Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD yoaH EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD yoaH Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD yoaH Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD yoaH Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD yoaH Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD yoaH Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD yoaH Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD yoaH Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD yoaH Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD yoaH Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD mcpB Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD mcpB Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD mcpB Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD mcpB Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD mcpB Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpB EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpB Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD mcpB Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD mcpB Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD mcpB Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD mcpB Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD mcpB Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD mcpB Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD mcpB Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD mcpB Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD epr Bsu -59..-34 TAATCTCTCTTTTTTTCTCCGATAT 9.476520
SigD epr Bha -98..-73 AAATACGACAAAATTCGACCGATAT 7.519220
SigD epr Mtu -128..-152 TCCATTTCGTTGGTAGCCCGATAT 8.086890
SigD epr Dra -167..-143 TACATGAAGATGCCGTCCCGATAT 9.552200
SigD mcpA Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD mcpA Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD mcpA Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD mcpA Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD mcpA Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpA EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpA Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD mcpA Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD mcpA Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD mcpA Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD mcpA Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD mcpA Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD mcpA Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD mcpA Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD mcpA Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD tlpC Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD tlpC Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD tlpC Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD tlpC Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD tlpC Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpC EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpC Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD tlpC Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD tlpC Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD tlpC Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD tlpC Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD tlpC Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD tlpC Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD tlpC Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD tlpC Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD flgB Bsu -258..-232 TCAAAAAGTTTCAAAAATGCCGAAAA 7.500000
SigD flgB Spy -134..-109 AAAATTTCAAAATTTTTGCCGATTT 7.907750
SigD flgB Pae -190..-214 AAAAAGGCCCGATATCGTCGATAT 8.277040
SigD lytD Bsu -70..-45 AAATGAAGCATGCGCGTGCCGATAA 8.453750
SigD lytD Sty -53..-25 TACAAAGCGCTATGCTTAACGCTGATAT 8.139420
SigD lytD Sme -117..-89 GAAAGGATCAGAACGCCATGGCCGAAAT 8.056460
SigD yfmT Bsu -56..-32 TAGAAAAAATAGATTCGCCCATAT 7.986470
SigD yfmT Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD yfmT Spy -23..-51 TAATCTTATTATATCACTTTTCCGATAT 9.476520
SigD yfmT Mtu -28..-54 TCATCGATTGGACACTTGTCCGATAT 8.011210
SigD yfmT MtC -28..-54 TCATCGATTGGACACTTGTCCGATAT 8.011210
SigD yfmT Eco -229..-205 TTAATGTTATATCTGCCCCGATAA 8.431400
SigD yfmT Ype -108..-135 TTATTTTCTCATTCTTACGGCCGATTT 7.556280
SigD yfmT Sty -39..-63 TAAAACCAAGACAGATTCCGATCT 8.465000
SigD yfmT Nos -98..-71 TAAATCGCTTATGGGTGGTGACGATAA 8.881470
SigD dltA Bsu -292..-266 TCATTTTCAAAAACATACGCCGATAT 9.916110
SigD dltA Spy -90..-115 TAAAATAAAATTGTCTTGCCAATAA 8.807350
SigD dltA Nos -87..-63 TTAAACGCATATAAACACCGATAA 8.329370
SigD mcpC Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD mcpC Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD mcpC Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD mcpC Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD mcpC Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpC EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD mcpC Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD mcpC Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD mcpC Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD mcpC Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD mcpC Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD mcpC Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD mcpC Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD mcpC Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD mcpC Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250
SigD tlpB Bsu -55..-31 TATTTACCCATTTCCAGCCGATAT 9.771060
SigD tlpB Bha -58..-34 AAAAATTTCCTCATGAACCGATAA 7.519220
SigD tlpB Cac -27..-51 TAAATATATAAACATTATCGATAT 7.946940
SigD tlpB Lin -140..-116 ATATCACCCATTTTACGCCGATAT 8.659470
SigD tlpB Eco -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpB EcZ -76..-49 TAAAGATAACCGCAGCGGGGCCGACAT 9.673800
SigD tlpB Ecs -57..-31 AAAGTTTCCCCCTTCCTTGCCGATAA 7.659340
SigD tlpB Ype -92..-66 AAAGTTCCCCTTTTTAGTGCCGATAA 7.659340
SigD tlpB Sty -234..-206 CAAGCGGGCCAGTCCCCTGAGCCGATAT 7.820440
SigD tlpB Vch -49..-22 TTAAGTGGCGTGATCTTAAGTCGATAA 7.925570
SigD tlpB Pae -179..-153 TCAATCGACCCGGAGCATGCCGAAAA 7.500000
SigD tlpB Rso -88..-60 TCAAGGTCTGCGCGCAAGTTGCCGATAG 9.121700
SigD tlpB Cje -181..-156 TAAATTTTTTAAATTATAACGATAT 7.946940
SigD tlpB Ccr -151..-124 TAAACCATCCCCTCGTTCCCACGATAT 8.048970
SigD tlpB Syn -122..-146 AAAAACTTTGGGGAGGCCCGATAA 7.621250