Regulated Operon: araR

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
araR araC, yvbS + 3484635..3485789 transcriptional regulator (LacI family) COG1609  

Operon evidence: Northern blotting (1.4 kb transcript)
Reference: Sa Nogueira I & Mota LJ (1997), Genbank X98354
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AraR Negative -6:+15 3484668..3484687 AAATTTGTCCGTATACATTT Sa Nogueira I & Mota LJ (1997): DB HM
Mota LJ, et al. (1999): FT
SigA Promoter -40:+6 3484634..3484679 AATGTTTTCTTACAAAGAACGCTGTGATATACTGAAATTTGTCCGT Sa Nogueira I & Ramos SS (1997): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGT
     >>>>>>>>>>>>    <<<<<<<<<<<<<
3485795..3485823
6..34
-15.7
araR

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai