Regulated Operon: ccdA-yneIJ

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ccdA
+ 1922443..1923150 integral membrane protein COG0785 ccdA-BAC x0550-BAC  
yneI yoxH + 1923239..1923601
COG0784  
yneJ yoxI + 1923680..1924171
COG4846 yneJ-BAC  

Operon evidence: Northern blotting (1.8 kb transcript)
Reference: Schiott T, et al. (1997), Schiott T & Hederstedt L (2000)
Comments: Internal promoters in front of yneI and yneJ, leading to a 0.9 kb yneIJ transcript and a 0.5 kb yneJ transcript respectively.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -44:+5 1922295..1922343 TCAAATGAGAAGGAGTATAATGTCTCAATGTCAAATTAAATTATATAAG Schiott T & Hederstedt L (2000): PE NB
SigA Promoter -42:+5 1923164..1923210 TCGTACTACTACTAATCCTTTTGTTTTTGGTACAATAAGACTATTAT Schiott T & Hederstedt L (2000): PE NB
SigA Promoter -42:+5 1923614..1923660 TCAAAATGGTTTTTTTTATTGTTTTGGAGTATAGTATATAGTATCAA Schiott T & Hederstedt L (2000): PE NB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAACCTTTCCTCTTGTCAGGAAAGGTTTTTTATTTGAGAA
     >>>>>>>>      <<<<<<<<
1924176..1924197
5..26
-12.2
yneJ

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai