Regulated Operon: citB

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
citB
+ 1925889..1928618 aconitate hydratase (aconitase) COG1048 citB-BAC  

Operon evidence: Genome analysis
Reference:
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Positive -35:+14 1925786..1925834 TTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTG Kim HJ, et al. (2003): RG FT
CcpC Negative -75:-52 1925746..1925769 TCATAAGTCGAACTTATTGTATTT Jourlin-Castelli C, et al. (2000): GS FT
CcpC Negative -35:-22 1925781..1925799 TGATATTTACTTATGTATG Jourlin-Castelli C, et al. (2000): GS FT
CodY Negative ND ND ND Kim HJ, et al. (2002): RG FT
CodY Negative ND ND ND Kim HJ, et al. (2002): RG FT
SigA Promoter -48:+18 1925773..1925838 AAAAACATTGATATTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG Whipple FW, et al. (1992): RO
TnrA Positive ND ND ND Blencke HM, et al. (2006): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AGGAAGAGAAGGCATTTCGCTTTCTCTTCTTTTTATGACAC
     >>>>>>>>     <<<<<<<<
1928633..1928653
15..35
-13.6
citB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai