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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | cotB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| cotB | - | 3713766..3714908 | spore coat protein (outer) |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Genbank Z93767 |
| Comments: | Genbank Z93767 does not list a terminator for cotB, but instead suggests a cotHB-ywrJ operon. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GerE | Positive | -81:-62 | 3715010..3715029 | GAAAATGGGTATTCGCGGAA |
Zheng L, et al. (1992): GS FT RO |
| GerE | Positive | -71:-41 | 3714989..3715009 | AAAGCGACAATTAGGCTATTG |
Zheng L, et al. (1992): GS FT RO |
| SigK | Promoter | -43:+4 | 3714945..3714991 | TTGAATTAGTTCAACAAATAAATGTGACACGTATATATGCAGTATGT |
Zheng LB & Losick R (1990): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATGGAGGAGCATCAGATAAAGTGATGCCCTTTTTCAGTTAAAGG >>>>>>>>> <<<<<<<< |
cotB |
|