Regulated Operon: cotM

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
cotM yneL - 1924864..1925256 spore coat protein (outer) COG0071  

Operon evidence: "downstream gene yneK, unlike cotM, is not induced during sporulation"
Reference: Henriques AO, et al. (1997)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
GerE Negative -42:-19 1925286..1925309 TTATGCGTTCACCCATTTATACTC Henriques AO, et al. (1997): DB RG
SigK Promoter -42:+3 1925265..1925309 TTATGCGTTCACCCATTTATACTCCACCGCATATGATGTAAAGCA Henriques AO, et al. (1997): PE DB RG
Reischl S, et al. (2001): RG HB DB
unknown Promoter -42:+3 1925255..1925299 ACCCATTTATACTCCACCGCATATGATGTAAAGCAAGGTTGATAT Henriques AO, et al. (1997): PE RG
Reischl S, et al. (2001): RG HB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AAAAAGTCACTTTCATCCCCTATTATGAAAGTGACTTTTTTTCCGTCCAT
     >>>>>>>>>>>        <<<<<<<<<<<
1924825..1924854
10..39
-15.7
cotM

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai